Rh2AG256400

transport inhibitor response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012300
Physical Location & Seq
Reverse (-)
29224016 .. 29231088
7073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG256400.1

Sequence Viewer

Length: 399 bp
ATGGCCGGTGCTTATCCTTGGCTCGAGGAGATCAGGCTCAAGAGGAAGGTCGTCACCGACGAGAGCTTGGAGCTGATTGCAAGTCTTTCAAGAATTTCAAGCTCCTTCTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAACGATTGTTGCGCCTGAAGAGGCAGAAGGAGAAACTGGTGAGGATGAAGCAAGAGGAGAGAGCCAGGAGAGGAGACGGAAGCAGTGCTTTAGATGATCAAGACATAAGGCCTACACAATATGGCCGGAAGAAGAAGGTCCATCCGGGAGATTTTCCGGCTTCGGACAGCACCGGTCCGGCGAAGGCTTACCAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

6.62

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 141
AcoI YGGCCR 2 cut(s) 3, 322
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 236
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 2 cut(s) 90, 99
AjnI CCWGG 2 cut(s) 136, 263
AluBI AGCT 4 cut(s) 66, 73, 102, 166
AluI AGCT 4 cut(s) 66, 73, 102, 166
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 3, 308, 322
ApoI RAATTY 1 cut(s) 93
AsiGI ACCGGT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 337, 374
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 46, 155, 182, 250
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 337, 374
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 138, 265
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 114
BlpI GCTNAGC 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 138, 265, 345
Bme18I GGWCC 2 cut(s) 337, 374
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 337, 374
BmrFI CCNGG 3 cut(s) 138, 265, 345
Bpu1102I GCTNAGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 371
Bse118I RCCGGY 2 cut(s) 5, 371
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 138, 265
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 249, 340
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 3 cut(s) 41, 269, 285
BshFI GGCC 3 cut(s) 5, 310, 324
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 6 cut(s) 6, 325, 344, 356, 372, 377
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 5, 310, 324
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 30, 295
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 2 cut(s) 111, 141
BspANI GGCC 3 cut(s) 5, 310, 324
BspCNI CTCAG 1 cut(s) 200
BsrFI RCCGGY 2 cut(s) 5, 371
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 2 cut(s) 5, 371
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 2 cut(s) 30, 295
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 138, 265
Bst6I CTCTTC 2 cut(s) 189, 212
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 249, 340
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 2 cut(s) 33, 298
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 30, 295
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 2 cut(s) 138, 265
BstSCI CCNGG 3 cut(s) 136, 263, 343
BsuRI GGCC 3 cut(s) 5, 310, 324
BtsCI GGATG 2 cut(s) 249, 340
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 2 cut(s) 5, 371
Cfr13I GGNCC 2 cut(s) 337, 374
CpoI CGGWCCG 1 cut(s) 374
CspAI ACCGGT 1 cut(s) 371
CspI CGGWCCG 1 cut(s) 374
DdeI CTNAG 1 cut(s) 187
DpnI GATC 2 cut(s) 32, 297
DpnII GATC 2 cut(s) 30, 295
EaeI YGGCCR 2 cut(s) 3, 322
Eam1104I CTCTTC 2 cut(s) 189, 212
EarI CTCTTC 2 cut(s) 189, 212
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 337, 374
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 136, 263
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 267
FaiI YATR 2 cut(s) 305, 321
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FbaI TGATCA 1 cut(s) 295
FokI GGATG 2 cut(s) 256, 327
FriOI GRGCYC 1 cut(s) 168
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 212
HaeIII GGCC 3 cut(s) 5, 310, 324
HapII CCGG 6 cut(s) 6, 325, 344, 356, 372, 377
HhaI GCGC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HpaII CCGG 6 cut(s) 6, 325, 344, 356, 372, 377
HphI GGTGA 4 cut(s) 46, 155, 182, 250
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 3 cut(s) 40, 90, 299
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 6 cut(s) 40, 115, 167, 220, 328, 376
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 147
HspAI GCGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 30, 295
LmnI GCTCC 3 cut(s) 70, 107, 163
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 52, 143
MalI GATC 2 cut(s) 32, 297
MboI GATC 2 cut(s) 30, 295
MboII GAAGA 4 cut(s) 206, 229, 340, 343
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 93, 394
MnlI CCTC 8 cut(s) 19, 36, 151, 190, 213, 234, 247, 263
MseI TTAA 1 cut(s) 397
MspI CCGG 6 cut(s) 6, 325, 344, 356, 372, 377
MspR9I CCNGG 3 cut(s) 138, 265, 345
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 2 cut(s) 138, 265
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 30, 295
NmuCI GTSAC 2 cut(s) 52, 143
PaeR7I CTCGAG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 343
PinAI ACCGGT 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 136, 263
PspGI CCWGG 2 cut(s) 136, 263
PspPI GGNCC 2 cut(s) 337, 374
PspXI VCTCGAGB 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 374
RsrII CGGWCCG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 397
Sau3AI GATC 2 cut(s) 30, 295
Sau96I GGNCC 2 cut(s) 337, 374
ScrFI CCNGG 3 cut(s) 138, 265, 345
SduI GDGCHC 1 cut(s) 168
SetI ASST 9 cut(s) 51, 68, 75, 104, 119, 150, 162, 168, 339
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 2 cut(s) 337, 374
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 23, 38
SmoI CTYRAG 2 cut(s) 23, 38
Sse9I AATT 2 cut(s) 93, 394
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 2 cut(s) 111, 141
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 136, 263, 343
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 93, 394
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 52, 143
Tsp45I GTSAC 2 cut(s) 52, 143
TspDTI ATGAA 2 cut(s) 109, 260
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 337, 374
XapI RAATTY 1 cut(s) 93
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.