RchiOBHm_Chr2g0121851

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006797
Physical Location & Seq
Reverse (-)
34722989 .. 34732514
9526 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1338 bp
ATGGACCTCCTTTCAGTTCCTTCTTCCCCATCTTTGGCTGGGAATGTGTTGTTTTTGGCACGGCAGCGTTTTTGCAACTGGAGGAGTCCTGAAAGACTTCACTTGGATGCAATATTTGCAACAGATGGAATTTTGTATAAGAATTTGCGAAGAGGAAGGGGATGTTTCTCCAAAACAACAGAAGCTTCTAGTTCTTTTTCAAATGGTACTGGAGAAAGTCCATACATACTCGTTAATACAAAACCAAGTGATGCACGTATAATTTATGCCGTAGCTCCTGCCATGGGTCATAACCAGGAGGCTCATCCAGAATCTCACTTTAGAGTTCCTGCTATAGTGCAGGCTCTTGACAAATTGGAACTCACACCAAAGTTCCGTGGCTCGAAGGTTATTGAACTTCAAAACTTTAGGCCAGCATCAGTGGATGACATCACAAGTGTTCATACCCAATCATATGTATCAGGCCTTGAAAAGGCTATGGATCAAGCCTCAAAAGACGGCCTTATTTTTATAGAAGGCTCTGGACCAACATATGCAACTGTTGAGACATTCCAGGAGTCACTGATTGCAGCTGGAGCAGGAATTGCCTTAATTGATTCAGTGGTAGCAGAGTCAAAGAACAGCAGGGATCCACCTACAGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCTATTGCAGCTCGTTATGCTCAGCGTGCACATGGCTTGAAGCGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCAGATATATTCTTCCTTTCAACTCACCAAGACGGGAGTTACCCTGGTACTGGAAAATTTGATGAGATAGGTCGCGGAGATGGCGAAGGAACGACACTAAATCTTCCTCTACCAGGTGGCTCGGGTGATACTGCCATGAGAACTGTGTTTGATGAAGTAATTGTGCCATGTGCTCAAAGGTTTAAGCCAGATATTATTCTCGTCTCTGCTGGGTATGATGCGCATGCATTGGATCCACTTGCAAGTTTGCAATTTACAACTGGAACATATTACATGCTAGCATCTAGCATTCAACAACTTGCCAAGGATATTTGTGGTGGTCGATGCGTGTTTTTCTTAGAAGGAGGATATAATCTCGACTCTCTTTCATATTCCGTTGCAGATTCATTTCGTGCTTTTCTTAAAGAGCCAAGTTTGGCGCCTACGTTTGACAACCCTGCCATGTTGTATGAAGAGCCATCAATGAAGGTTAAGCAGGCAATTCAGAGGGTTAAACATTTACATTCTTTGTGA

Protein Analysis

445

Amino Acids

48.36

Weight (kDa)

5.96

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 102 - 406 1.8e-90 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
Acc16I TGCGCA 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 1243
AccII CGCG 1 cut(s) 900
AciI CCGC 1 cut(s) 900
AclWI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
AcsI RAATTY 3 cut(s) 129, 142, 881
AcyI GRCGYC 1 cut(s) 1244
AfaI GTAC 2 cut(s) 208, 874
AfiI CCNNNNNNNGG 6 cut(s) 34, 284, 472, 638, 875, 938
AgsI TTSAA 7 cut(s) 201, 395, 401, 470, 757, 846, 1118
AjnI CCWGG 5 cut(s) 294, 552, 661, 868, 937
AluBI AGCT 4 cut(s) 185, 275, 572, 728
AluI AGCT 4 cut(s) 185, 275, 572, 728
Alw21I GWGCWC 2 cut(s) 748, 1000
Alw26I GTCTC 2 cut(s) 539, 1033
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
Ama87I CYCGRG 1 cut(s) 946
AoxI GGCC 3 cut(s) 410, 463, 499
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 3 cut(s) 64, 569, 725
ApoI RAATTY 3 cut(s) 129, 142, 881
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 2 cut(s) 1048, 1246
AspS9I GGNCC 3 cut(s) 4, 524, 686
AsuHPI GGTGA 3 cut(s) 779, 842, 962
AsuNHI GCTAGC 1 cut(s) 1102
AvaI CYCGRG 1 cut(s) 946
AvaII GGWCC 3 cut(s) 4, 524, 686
BaeGI GKGCMC 1 cut(s) 748
BamHI GGATCC 3 cut(s) 628, 823, 1057
BanI GGYRCC 1 cut(s) 1243
Bbv12I GWGCWC 2 cut(s) 748, 1000
BbvI GCAGC 3 cut(s) 76, 581, 737
BccI CCATC 5 cut(s) 37, 119, 685, 899, 1291
BceAI ACGGC 3 cut(s) 77, 254, 514
BciT130I CCWGG 5 cut(s) 296, 554, 663, 870, 939
BcoDI GTCTC 2 cut(s) 539, 1033
BfaI CTAG 3 cut(s) 189, 1103, 1110
BfmI CTRYAG 2 cut(s) 333, 636
BfoI RGCGCY 1 cut(s) 1247
BisI GCNGC 3 cut(s) 65, 570, 726
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 3 cut(s) 66, 571, 727
Bme1390I CCNGG 5 cut(s) 296, 554, 663, 870, 939
Bme18I GGWCC 3 cut(s) 4, 524, 686
BmeT110I CYCGRG 1 cut(s) 946
BmgT120I GGNCC 3 cut(s) 4, 524, 686
BmiI GGNNCC 5 cut(s) 630, 687, 825, 1059, 1245
BmrFI CCNGG 5 cut(s) 296, 554, 663, 870, 939
BmsI GCATC 7 cut(s) 97, 241, 425, 799, 1033, 1115, 1139
BmtI GCTAGC 1 cut(s) 1106
BpmI CTGGAG 4 cut(s) 100, 231, 594, 645
Bpu1102I GCTNAGC 1 cut(s) 738
BsaAI YACGTR 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 1244
BsaJI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 284, 472, 638, 875, 938
Bse1I ACTGG 4 cut(s) 83, 214, 880, 1090
BseBI CCWGG 5 cut(s) 296, 554, 663, 870, 939
BseDI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
BseGI GGATG 4 cut(s) 112, 167, 304, 430
BseLI CCNNNNNNNGG 6 cut(s) 34, 284, 472, 638, 875, 938
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 4 cut(s) 83, 214, 880, 1090
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 3 cut(s) 76, 581, 737
BseYI CCCAGC 2 cut(s) 38, 1034
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 900
BshFI GGCC 3 cut(s) 412, 465, 501
BshNI GGYRCC 1 cut(s) 1243
BsiHKAI GWGCWC 2 cut(s) 748, 1000
BsiHKCI CYCGRG 1 cut(s) 946
BslFI GGGAC 1 cut(s) 814
BslI CCNNNNNNNGG 6 cut(s) 34, 284, 472, 638, 875, 938
BsmAI GTCTC 2 cut(s) 539, 1033
BsmBI CGTCTC 1 cut(s) 1033
BsmFI GGGAC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 1113
BsnI GGCC 3 cut(s) 412, 465, 501
BsoBI CYCGRG 1 cut(s) 946
Bsp1286I GDGCHC 2 cut(s) 748, 1000
Bsp143I GATC 4 cut(s) 481, 628, 823, 1057
Bsp1720I GCTNAGC 1 cut(s) 738
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 900
BspANI GGCC 3 cut(s) 412, 465, 501
BspCNI CTCAG 1 cut(s) 751
BspFNI CGCG 1 cut(s) 900
BspLI GGNNCC 5 cut(s) 630, 687, 825, 1059, 1245
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
BspQI GCTCTTC 1 cut(s) 1272
BspT107I GGYRCC 1 cut(s) 1243
BsrI ACTGG 4 cut(s) 83, 214, 880, 1090
BssECI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
BssMI GATC 4 cut(s) 481, 628, 823, 1057
BssNI GRCGYC 1 cut(s) 1244
BssT1I CCWWGG 2 cut(s) 282, 1128
Bst2UI CCWGG 5 cut(s) 296, 554, 663, 870, 939
Bst4CI ACNGT 2 cut(s) 541, 970
Bst6I CTCTTC 2 cut(s) 145, 1272
BstACI GRCGYC 1 cut(s) 1244
BstAPI GCANNNNNTGC 2 cut(s) 116, 584
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 6 cut(s) 342, 414, 744, 1050, 1104, 1302
BstDEI CTNAG 2 cut(s) 738, 1162
BstDSI CCRYGG 3 cut(s) 282, 376, 790
BstENI CCTNNNNNAGG 2 cut(s) 470, 936
BstF5I GGATG 4 cut(s) 112, 167, 304, 430
BstFNI CGCG 1 cut(s) 900
BstH2I RGCGCY 1 cut(s) 1247
BstHHI GCGC 2 cut(s) 1048, 1246
BstKTI GATC 4 cut(s) 484, 631, 826, 1060
BstMAI GTCTC 2 cut(s) 539, 1033
BstMBI GATC 4 cut(s) 481, 628, 823, 1057
BstMWI GCNNNNNNNGC 7 cut(s) 116, 575, 584, 725, 734, 743, 906
BstNI CCWGG 5 cut(s) 296, 554, 663, 870, 939
BstNSI RCATGY 2 cut(s) 1052, 1102
BstSCI CCNGG 5 cut(s) 294, 552, 661, 868, 937
BstSFI CTRYAG 2 cut(s) 333, 636
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 1 cut(s) 900
BstV1I GCAGC 3 cut(s) 76, 581, 737
BstX2I RGATCY 3 cut(s) 628, 823, 1057
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 3 cut(s) 628, 823, 1057
BsuRI GGCC 3 cut(s) 412, 465, 501
BtgI CCRYGG 3 cut(s) 282, 376, 790
BtsCI GGATG 4 cut(s) 112, 167, 304, 430
BtsIMutI CAGTG 3 cut(s) 426, 560, 606
Cac8I GCNNGC 6 cut(s) 342, 414, 744, 1050, 1104, 1302
CfoI GCGC 2 cut(s) 1048, 1246
Cfr13I GGNCC 3 cut(s) 4, 524, 686
CsiI ACCWGGT 1 cut(s) 937
Csp6I GTAC 2 cut(s) 207, 873
CviAII CATG 8 cut(s) 283, 671, 749, 961, 993, 1049, 1099, 1267
CviQI GTAC 2 cut(s) 207, 873
DdeI CTNAG 2 cut(s) 738, 1162
DinI GGCGCC 1 cut(s) 1245
DpnI GATC 4 cut(s) 483, 630, 825, 1059
DpnII GATC 4 cut(s) 481, 628, 823, 1057
Eam1104I CTCTTC 2 cut(s) 145, 1272
EarI CTCTTC 2 cut(s) 145, 1272
Eco130I CCWWGG 2 cut(s) 282, 1128
Eco147I AGGCCT 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 4, 524, 686
Eco88I CYCGRG 1 cut(s) 946
EcoNI CCTNNNNNAGG 2 cut(s) 470, 936
EcoRII CCWGG 5 cut(s) 294, 552, 661, 868, 937
EcoT14I CCWWGG 2 cut(s) 282, 1128
EcoT22I ATGCAT 1 cut(s) 1054
EgeI GGCGCC 1 cut(s) 1245
EheI GGCGCC 1 cut(s) 1245
ErhI CCWWGG 2 cut(s) 282, 1128
Esp3I CGTCTC 1 cut(s) 1033
FaeI CATG 8 cut(s) 286, 674, 752, 964, 996, 1052, 1102, 1270
FalI AAGNNNNNCTT 4 cut(s) 486, 518, 749, 781
FaqI GGGAC 1 cut(s) 814
FatI CATG 8 cut(s) 282, 670, 748, 960, 992, 1048, 1098, 1266
FauNDI CATATG 2 cut(s) 454, 532
Fnu4HI GCNGC 3 cut(s) 65, 570, 726
FokI GGATG 4 cut(s) 119, 174, 291, 437
Fsp4HI GCNGC 3 cut(s) 65, 570, 726
FspAI RTGCGCAY 1 cut(s) 1047
FspBI CTAG 3 cut(s) 189, 1103, 1110
FspI TGCGCA 1 cut(s) 1047
GlaI GCGC 2 cut(s) 1047, 1245
GluI GCNGC 3 cut(s) 65, 570, 726
GsaI CCCAGC 2 cut(s) 42, 1038
GsuI CTGGAG 4 cut(s) 100, 231, 594, 645
HaeII RGCGCY 1 cut(s) 1247
HaeIII GGCC 3 cut(s) 412, 465, 501
HhaI GCGC 2 cut(s) 1048, 1246
Hin1I GRCGYC 1 cut(s) 1244
Hin1II CATG 8 cut(s) 286, 674, 752, 964, 996, 1052, 1102, 1270
Hin6I GCGC 2 cut(s) 1046, 1244
HinP1I GCGC 2 cut(s) 1046, 1244
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 7 cut(s) 85, 311, 557, 596, 611, 1184, 1208
HphI GGTGA 3 cut(s) 779, 842, 962
Hpy166II GTNNAC 2 cut(s) 746, 787
Hpy188I TCNGA 2 cut(s) 690, 1311
Hpy188III TCNNGA 6 cut(s) 89, 308, 347, 522, 827, 1181
Hpy8I GTNNAC 2 cut(s) 746, 787
HpyAV CCTTC 7 cut(s) 30, 150, 379, 509, 905, 1160, 1285
HpyCH4III ACNGT 2 cut(s) 541, 970
HpyCH4IV ACGT 2 cut(s) 256, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 575, 584, 725, 734, 743, 906
HpyF3I CTNAG 2 cut(s) 738, 1162
HpySE526I ACGT 2 cut(s) 256, 1250
Hsp92I GRCGYC 1 cut(s) 1244
Hsp92II CATG 8 cut(s) 286, 674, 752, 964, 996, 1052, 1102, 1270
HspAI GCGC 2 cut(s) 1046, 1244
KasI GGCGCC 1 cut(s) 1243
Kzo9I GATC 4 cut(s) 481, 628, 823, 1057
LguI GCTCTTC 1 cut(s) 1272
LmnI GCTCC 2 cut(s) 280, 575
Lsp1109I GCAGC 3 cut(s) 76, 581, 737
LweI GCATC 7 cut(s) 97, 241, 425, 799, 1033, 1115, 1139
MabI ACCWGGT 1 cut(s) 937
MaeI CTAG 3 cut(s) 189, 1103, 1110
MaeII ACGT 2 cut(s) 256, 1250
MaeIII GTNAC 2 cut(s) 558, 863
MalI GATC 4 cut(s) 483, 630, 825, 1059
MboI GATC 4 cut(s) 481, 628, 823, 1057
MboII GAAGA 5 cut(s) 15, 162, 829, 920, 1289
MflI RGATCY 3 cut(s) 628, 823, 1057
MhlI GDGCHC 2 cut(s) 748, 1000
Mly113I GGCGCC 1 cut(s) 1244
MlyI GAGTC 4 cut(s) 94, 566, 620, 1178
Mph1103I ATGCAT 1 cut(s) 1054
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 7 cut(s) 234, 590, 650, 1008, 1227, 1296, 1317
MslI CAYNNNNRTG 2 cut(s) 105, 795
MspA1I CMGCKG 1 cut(s) 572
MspR9I CCNGG 5 cut(s) 296, 554, 663, 870, 939
Mva1269I GAATGC 1 cut(s) 1113
MvaI CCWGG 5 cut(s) 296, 554, 663, 870, 939
MvnI CGCG 1 cut(s) 900
MwoI GCNNNNNNNGC 7 cut(s) 116, 575, 584, 725, 734, 743, 906
NarI GGCGCC 1 cut(s) 1244
NcoI CCATGG 1 cut(s) 282
NdeI CATATG 2 cut(s) 454, 532
NdeII GATC 4 cut(s) 481, 628, 823, 1057
NheI GCTAGC 1 cut(s) 1102
NlaIII CATG 8 cut(s) 286, 674, 752, 964, 996, 1052, 1102, 1270
NlaIV GGNNCC 5 cut(s) 630, 687, 825, 1059, 1245
NmuCI GTSAC 1 cut(s) 558
NsbI TGCGCA 1 cut(s) 1047
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 2 cut(s) 1052, 1102
PaeI GCATGC 1 cut(s) 1052
PceI AGGCCT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 1272
PctI GAATGC 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 311, 596, 1208
PfoI TCCNGGA 2 cut(s) 552, 661
PkrI GCNGC 3 cut(s) 66, 571, 727
PleI GAGTC 4 cut(s) 93, 565, 619, 1178
PluTI GGCGCC 1 cut(s) 1247
PpsI GAGTC 4 cut(s) 93, 565, 619, 1178
Ppu21I YACGTR 1 cut(s) 257
PsiI TTATAA 1 cut(s) 770
Psp6I CCWGG 5 cut(s) 294, 552, 661, 868, 937
PspFI CCCAGC 2 cut(s) 38, 1034
PspGI CCWGG 5 cut(s) 294, 552, 661, 868, 937
PspN4I GGNNCC 5 cut(s) 630, 687, 825, 1059, 1245
PspPI GGNCC 3 cut(s) 4, 524, 686
PsuI RGATCY 3 cut(s) 628, 823, 1057
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 208, 874
RsaNI GTAC 2 cut(s) 207, 873
RseI CAYNNNNRTG 2 cut(s) 105, 795
SapI GCTCTTC 1 cut(s) 1272
SaqAI TTAA 7 cut(s) 234, 590, 650, 1008, 1227, 1296, 1317
SatI GCNGC 3 cut(s) 65, 570, 726
Sau3AI GATC 4 cut(s) 481, 628, 823, 1057
Sau96I GGNCC 3 cut(s) 4, 524, 686
SchI GAGTC 4 cut(s) 94, 566, 620, 1178
ScrFI CCNGG 5 cut(s) 296, 554, 663, 870, 939
SduI GDGCHC 2 cut(s) 748, 1000
SexAI ACCWGGT 1 cut(s) 937
SfaNI GCATC 7 cut(s) 97, 241, 425, 799, 1033, 1115, 1139
SfcI CTRYAG 2 cut(s) 333, 636
SfoI GGCGCC 1 cut(s) 1245
SinI GGWCC 3 cut(s) 4, 524, 686
SmiMI CAYNNNNRTG 2 cut(s) 105, 795
SphI GCATGC 1 cut(s) 1052
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 1 cut(s) 900
SspDI GGCGCC 1 cut(s) 1243
SspI AATATT 2 cut(s) 114, 715
SspMI CTAG 3 cut(s) 189, 1103, 1110
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 5 cut(s) 294, 552, 661, 868, 937
StyI CCWWGG 2 cut(s) 282, 1128
TaaI ACNGT 2 cut(s) 541, 970
TaiI ACGT 2 cut(s) 259, 1253
TaqI TCGA 3 cut(s) 383, 1147, 1182
TfiI GAWTC 3 cut(s) 311, 596, 1208
Tru1I TTAA 7 cut(s) 234, 590, 650, 1008, 1227, 1296, 1317
Tru9I TTAA 7 cut(s) 234, 590, 650, 1008, 1227, 1296, 1317
TscAI CASTG 3 cut(s) 426, 567, 606
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 3 cut(s) 64, 569, 725
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 6 cut(s) 431, 993, 1182, 1200, 1290, 1304
TspGWI ACGGA 2 cut(s) 365, 1189
TspRI CASTG 3 cut(s) 426, 567, 606
VneI GTGCAC 1 cut(s) 744
VpaK11BI GGWCC 3 cut(s) 4, 524, 686
XagI CCTNNNNNAGG 2 cut(s) 470, 936
XapI RAATTY 3 cut(s) 129, 142, 881
XceI RCATGY 2 cut(s) 1052, 1102
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 3 cut(s) 189, 1103, 1110
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.