RchiOBHm_Chr2g0128781

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014053
Physical Location & Seq
Forward (+)
44108522 .. 44109967
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGCACAGGAAGAATAATGGCACAGCAGGAGCAGGAGCAGTACCAGCATGTGCAGCATGCAAGCATCAAAGGAAAAAGTGCAACGAAGGTTGCACTTTGGCACCTTTTTTTCCAGTGGAGAGGAATCGAGAATTCCAAGCAGTGCACAAAGTTTTCGGGGTTAGCAATGTAACAAAGATGGTGAAGAATGCCAATGAAGCAAACCGGAGAAAGGTTGTTGATTCATTGGTATGGGAAGCTCTTTGCAGGCAAAAAGACCCGGTGCTTGGTCCTTACGGAGAGTATAGGATGATTTTCGATGAGCTCAAGATGTATAAAAATCATGAGAACCAAACGGTTCCTTTACAAGTGCAAAAGGGCATGTGTTACAAATCTCTGACGGATTTAGTTGCTTGGAACTATGAAACTAATGGGATTAGCGATGGAATAAATGGAGGAAATGGAATCACTACTACTAATAACAATTTGGATTATGATCTTCAGGTTAACGAAAACGTCAGAATCAATTCAGTCCCGCCATATGGTTATCCTTTAACTTGTGAGCAAGAAATTGCAGCAGAGAAGATAAAGCAAGTAAAAATAGCTGCTGATTCCATTGTTGTTCCAGTAGTACACCAGCAGGGGCATTCTATCAACAACATTAATCAGCAGTACTATATTTCCGGTCAACTTAATCAACACATTGGCAAGCCATTAGAAAGGACAATATGGGAAGGCGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

241

Amino Acids

26.96

Weight (kDa)

8.6

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 16 - 109 8.5e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 2 cut(s) 515, 717
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 3 cut(s) 42, 612, 653
AfiI CCNNNNNNNGG 3 cut(s) 211, 266, 521
AluBI AGCT 3 cut(s) 239, 304, 584
AluI AGCT 3 cut(s) 239, 304, 584
Alw21I GWGCWC 2 cut(s) 147, 306
Alw44I GTGCAC 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 53, 554, 584
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 147, 306
BbvI GCAGC 3 cut(s) 65, 566, 571
BccI CCATC 2 cut(s) 172, 416
BcnI CCSGG 1 cut(s) 260
BisI GCNGC 3 cut(s) 54, 555, 585
BlsI GCNGC 3 cut(s) 55, 556, 586
BmcAI AGTACT 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 102, 339
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 474
BsaWI WCCGGW 2 cut(s) 204, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 266, 521
Bse1I ACTGG 2 cut(s) 113, 605
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 474
BseGI GGATG 1 cut(s) 294
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 211, 266, 521
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 113, 605
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 3 cut(s) 65, 566, 571
BsgI GTGCAG 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 147, 306
BsiSI CCGG 3 cut(s) 205, 260, 663
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 211, 266, 521
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 2 cut(s) 193, 625
Bsp1286I GDGCHC 2 cut(s) 147, 306
Bsp143I GATC 2 cut(s) 475, 719
BspACI CCGC 2 cut(s) 515, 717
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 102, 339
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 113, 605
BssMI GATC 2 cut(s) 475, 719
Bst4CI ACNGT 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 58, 62, 248, 689
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 478, 722
BstMBI GATC 2 cut(s) 475, 719
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 197
BstNSI RCATGY 3 cut(s) 51, 60, 364
BstSCI CCNGG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 65, 566, 571
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 120, 147
Cac8I GCNNGC 4 cut(s) 58, 62, 248, 689
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 41, 611, 652
CviAII CATG 4 cut(s) 48, 57, 323, 361
CviJI RGCY 4 cut(s) 239, 304, 584, 691
CviKI_1 RGCY 4 cut(s) 239, 304, 584, 691
CviQI GTAC 3 cut(s) 41, 611, 652
DpnI GATC 2 cut(s) 477, 721
DpnII GATC 2 cut(s) 475, 719
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 4 cut(s) 51, 60, 326, 364
FaqI GGGAC 1 cut(s) 497
FatI CATG 4 cut(s) 47, 56, 322, 360
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 54, 555, 585
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 54, 555, 585
GluI GCNGC 3 cut(s) 54, 555, 585
HapII CCGG 3 cut(s) 205, 260, 663
Hin1II CATG 4 cut(s) 51, 60, 326, 364
HincII GTYRAC 2 cut(s) 487, 668
HindII GTYRAC 2 cut(s) 487, 668
HinfI GANTC 5 cut(s) 124, 221, 444, 501, 590
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 3 cut(s) 205, 260, 663
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 4 cut(s) 145, 487, 613, 668
Hpy188I TCNGA 2 cut(s) 378, 500
Hpy188III TCNNGA 3 cut(s) 128, 307, 323
Hpy8I GTNNAC 4 cut(s) 145, 487, 613, 668
HpyAV CCTTC 2 cut(s) 80, 707
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 9 cut(s) 4, 53, 60, 81, 93, 145, 246, 352, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 197
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 4 cut(s) 51, 60, 326, 364
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 2 cut(s) 475, 719
LmnI GCTCC 2 cut(s) 29, 35
Lsp1109I GCAGC 3 cut(s) 65, 566, 571
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 169, 365
MalI GATC 2 cut(s) 477, 721
MboI GATC 2 cut(s) 475, 719
MboII GAAGA 4 cut(s) 22, 196, 470, 574
MhlI GDGCHC 2 cut(s) 147, 306
MluCI AATT 4 cut(s) 131, 463, 505, 549
MnlI CCTC 2 cut(s) 114, 428
MroXI GAANNNNTTC 1 cut(s) 505
MseI TTAA 4 cut(s) 486, 533, 642, 672
MslI CAYNNNNRTG 1 cut(s) 229
MspI CCGG 3 cut(s) 205, 260, 663
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 2 cut(s) 193, 625
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 197
NciI CCSGG 1 cut(s) 260
NdeI CATATG 1 cut(s) 520
NdeII GATC 2 cut(s) 475, 719
NlaIII CATG 4 cut(s) 51, 60, 326, 364
NlaIV GGNNCC 2 cut(s) 102, 339
NspI RCATGY 3 cut(s) 51, 60, 364
PaeI GCATGC 1 cut(s) 60
PagI TCATGA 1 cut(s) 322
PctI GAATGC 2 cut(s) 193, 625
PdmI GAANNNNTTC 1 cut(s) 505
PfeI GAWTC 5 cut(s) 124, 221, 444, 501, 590
PkrI GCNGC 3 cut(s) 55, 556, 586
PshBI ATTAAT 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 102, 339
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 3 cut(s) 42, 612, 653
RsaNI GTAC 3 cut(s) 41, 611, 652
RseI CAYNNNNRTG 1 cut(s) 229
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 4 cut(s) 486, 533, 642, 672
SatI GCNGC 3 cut(s) 54, 555, 585
Sau3AI GATC 2 cut(s) 475, 719
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 147, 306
SetI ASST 8 cut(s) 91, 106, 216, 241, 306, 486, 498, 586
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SphI GCATGC 1 cut(s) 60
Sse9I AATT 4 cut(s) 131, 463, 505, 549
SsiI CCGC 2 cut(s) 515, 717
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 498
TaqI TCGA 2 cut(s) 127, 297
TasI AATT 4 cut(s) 131, 463, 505, 549
TatI WGTACW 2 cut(s) 610, 651
TfiI GAWTC 5 cut(s) 124, 221, 444, 501, 590
Tru1I TTAA 4 cut(s) 486, 533, 642, 672
Tru9I TTAA 4 cut(s) 486, 533, 642, 672
TscAI CASTG 2 cut(s) 120, 147
TseI GCWGC 3 cut(s) 53, 554, 584
TspDTI ATGAA 3 cut(s) 210, 213, 417
TspGWI ACGGA 2 cut(s) 291, 395
TspRI CASTG 2 cut(s) 120, 147
VneI GTGCAC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 1 cut(s) 131
XceI RCATGY 3 cut(s) 51, 60, 364
XmnI GAANNNNTTC 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.