RchiOBHm_Chr2g0129621

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014335
Physical Location & Seq
Reverse (-)
45280584 .. 45281179
596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGCAGACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGTATCGACAATGTTGAGATAGACATGGCTCTGCAGAAGGTCACAGTGACCGGGTGGGCAGACCAAAAGAAAGTTCTCAAGACGGTTCGAAAAACTGGTCGAAGAGCGGAGCTCTGGCAATTCCCCTTTAATAATTCAAATTCAGACAACAGCGATGTATACAATCAGAGTCAGTGTAATGGTCCGATTAATAACTATGCTCCCCAGCCTTCCTCATCTTACAACTACTACAAGCACGGATATGACAGTGGTCCTTCTTCTAACTATGGCTATTCTCAGAACCCTGCACATTCCTCCGTTTACGGGTATCAACCTACGACGGCCTTCAGTGACGAAAACCCTAATGCTTGTTCTGTAATGTGA

Protein Analysis

147

Amino Acids

16.51

Weight (kDa)

7.65

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 7 - 61 3.5e-15 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06330
fragaria_vesca FvH4_6g27360 FvH4_6g27360
malus_domestica MD09G1238100.v1.1
prunus_persica Prupe.3G118600_v2.0.a1
pyrus_communis pycom09g15660
rosa_chinensis RchiOBHm_Chr2g0129621
rosa_laevigata RLG00000019090
rosa_multiflora Rmu_sc0011456.1_g000002
rosa_roxburghii Rroxscaffold_2G00114510
rosa_rugosa Rorug02G0287500
rosa_samantha Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 2 cut(s) 53, 391
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 76, 193
AluI AGCT 2 cut(s) 76, 193
Alw21I GWGCWC 1 cut(s) 195
AoxI GGCC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 220
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AseI ATTAAT 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 263, 332
AsuC2I CCSGG 2 cut(s) 39, 133
AsuII TTCGAA 1 cut(s) 169
AvaII GGWCC 2 cut(s) 263, 332
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 417
BcnI CCSGG 2 cut(s) 39, 133
BfmI CTRYAG 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 39, 133
Bme18I GGWCC 2 cut(s) 263, 332
BmgT120I GGNCC 2 cut(s) 263, 332
BmrFI CCNGG 2 cut(s) 39, 133
BmsI GCATC 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu14I TTCGAA 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 39, 133
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 2 cut(s) 39, 132
BslI CCNNNNNNNGG 1 cut(s) 384
BsnI GGCC 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 195
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 127, 166, 329
Bst6I CTCTTC 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 37, 131
BstSFI CTRYAG 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 4 cut(s) 132, 260, 334, 415
Cfr13I GGNCC 2 cut(s) 263, 332
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 106
CviJI RGCY 6 cut(s) 76, 110, 193, 289, 351, 404
CviKI_1 RGCY 6 cut(s) 76, 110, 193, 289, 351, 404
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 263, 332
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 53, 391
EcoICRI GAGCTC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 109
FaiI YATR 7 cut(s) 27, 29, 107, 241, 279, 324, 348
FatI CATG 1 cut(s) 105
FauNDI CATATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 404
HapII CCGG 2 cut(s) 39, 132
Hin1II CATG 1 cut(s) 109
HinfI GANTC 1 cut(s) 250
HpaII CCGG 2 cut(s) 39, 132
Hpy166II GTNNAC 3 cut(s) 65, 241, 382
Hpy188I TCNGA 5 cut(s) 72, 226, 249, 267, 360
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 3 cut(s) 65, 241, 382
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 4 cut(s) 112, 300, 345, 415
HpyCH4III ACNGT 3 cut(s) 127, 166, 329
HpyCH4V TGCA 4 cut(s) 4, 25, 115, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 190, 286
LpnPI CCDG 6 cut(s) 52, 145, 162, 181, 299, 378
LweI GCATC 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 121, 127, 410
MbiI CCGCTC 1 cut(s) 188
MboII GAAGA 2 cut(s) 195, 330
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 3 cut(s) 200, 214, 220
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 2 cut(s) 304, 385
MseI TTAA 2 cut(s) 210, 270
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 2 cut(s) 39, 132
MspR9I CCNGG 2 cut(s) 39, 133
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 2 cut(s) 39, 133
NdeI CATATG 1 cut(s) 27
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 3 cut(s) 121, 127, 410
NspV TTCGAA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 330
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 263, 332
PstI CTGCAG 1 cut(s) 117
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 210, 270
Sau96I GGNCC 2 cut(s) 263, 332
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 39, 133
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 57, 78, 85, 123, 195, 397
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 169
SinI GGWCC 2 cut(s) 263, 332
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 200, 214, 220
SsiI CCGC 1 cut(s) 188
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 37, 131
TaaI ACNGT 3 cut(s) 127, 166, 329
TaqI TCGA 3 cut(s) 87, 169, 181
TasI AATT 3 cut(s) 200, 214, 220
TatI WGTACW 1 cut(s) 62
Tru1I TTAA 2 cut(s) 210, 270
Tru9I TTAA 2 cut(s) 210, 270
TscAI CASTG 4 cut(s) 132, 260, 334, 415
TseFI GTSAC 3 cut(s) 121, 127, 410
Tsp45I GTSAC 3 cut(s) 121, 127, 410
TspGWI ACGGA 2 cut(s) 333, 367
TspRI CASTG 4 cut(s) 132, 260, 334, 415
VpaK11BI GGWCC 2 cut(s) 263, 332
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.