Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013899

Physical Location & Seq

Genomic Coordinates Reverse (-)

63028595 .. 63030852

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCATAAAAAAAGAATTCAATGCCCTCTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTCCTTGTTAAATCCCCAGAGCTGTTGTCTCTCTTTTCCATTGTGGGATCAAAAATGATGAGTGGAGGAAATCCAAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCCTTTAAAAGAAGACTGGACTCCTCAATCTCTTCCAGACTCTTCCCTCACCACCCTTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTACTACAACTCCTAATAATAATAATACTATTCCAACACCTCCAGAGTACAACCCTGCTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCCTCATCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTCGGCCACAGGGTTCCGGTACCAACCCTCAACTTTTTCTCAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGCAAATGCAAGAAGTTTAATGAGCTCCTATAAAGGCTACTCATCCCAATCTCAGTTTCAAAGCCTCACAGATCATTATCCACAGCAGCAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATCAAAACAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTTGATCTTGCACCCAATTCCAGACTTCATAATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

364

Amino Acids

41.46

Weight (kDa)

9.22

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	53 - 83	2.6e-14	QLQ
WRC	PF08879	119 - 161	3.7e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13960
fragaria_vesca	FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica	MD09G1183300.v1.1
prunus_persica	Prupe.3G041800_v2.0.a1
pyrus_communis	pycom09g10100
rosa_chinensis	RchiOBHm_Chr2g0145381
rosa_laevigata	RLG00000020139
rosa_multiflora	Rmu_sc0001298.1_g000050
rosa_roxburghii	Rroxscaffold_2G00100740
rosa_rugosa	Rorug02G0391800
rosa_samantha	Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana	Rw2G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1000
Acc65I	GGTACC	2 cut(s)	153, 686
AccB1I	GGYRCC	2 cut(s)	153, 686
AclWI	GGATC	3 cut(s)	112, 724, 789
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	5 cut(s)	155, 212, 431, 548, 688
AfiI	CCNNNNNNNGG	1 cut(s)	362
AjnI	CCWGG	3 cut(s)	361, 909, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	8 cut(s)	79, 184, 197, 485, 734, 790, 840, 986
AluI	AGCT	8 cut(s)	79, 184, 197, 485, 734, 790, 840, 986
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	3 cut(s)	90, 223, 1017
AlwI	GGATC	3 cut(s)	112, 724, 789
AoxI	GGCC	2 cut(s)	671, 1028
ApeKI	GCWGC	2 cut(s)	901, 919
ApoI	RAATTY	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	463
Asp718I	GGTACC	2 cut(s)	153, 686
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	293, 604
AsuNHI	GCTAGC	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	941
BanI	GGYRCC	2 cut(s)	153, 686
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	271, 804
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	913, 931
BccI	CCATC	3 cut(s)	239, 377, 1082
BciT130I	CCWGG	3 cut(s)	363, 911, 1051
BclI	TGATCA	2 cut(s)	736, 988
BcoDI	GTCTC	3 cut(s)	90, 223, 1017
BfaI	CTAG	2 cut(s)	492, 791
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	2 cut(s)	902, 920
BlsI	GCNGC	2 cut(s)	903, 921
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	3 cut(s)	363, 911, 1051
BmiI	GGNNCC	3 cut(s)	155, 682, 688
BmrFI	CCNGG	3 cut(s)	363, 911, 1051
BmtI	GCTAGC	1 cut(s)	794
BpiI	GAAGAC	2 cut(s)	271, 804
BpmI	CTGGAG	2 cut(s)	243, 525
BsaBI	GATNNNNATC	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	909
BsaWI	WCCGGW	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	273, 1031
Bse3DI	GCAATG	1 cut(s)	922
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	3 cut(s)	363, 911, 1051
BseDI	CCNNGG	1 cut(s)	909
BseGI	GGATG	3 cut(s)	231, 857, 919
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	1 cut(s)	881
BseNI	ACTGG	2 cut(s)	273, 1031
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	2 cut(s)	913, 931
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	673, 1030
BshNI	GGYRCC	2 cut(s)	153, 686
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	2 cut(s)	212, 988
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	3 cut(s)	90, 223, 1017
BsmFI	GGGAC	2 cut(s)	212, 988
BsnI	GGCC	2 cut(s)	673, 1030
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	842, 941
Bsp143I	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
BspANI	GGCC	2 cut(s)	673, 1030
BspCNI	CTCAG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	155, 682, 688
BspMAI	CTGCAG	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	112, 724, 789
BspT107I	GGYRCC	2 cut(s)	153, 686
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	922
BsrI	ACTGG	2 cut(s)	273, 1031
BssECI	CCNNGG	1 cut(s)	909
BssMI	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
Bst2UI	CCWGG	3 cut(s)	363, 911, 1051
Bst4CI	ACNGT	3 cut(s)	174, 434, 464
Bst6I	CTCTTC	3 cut(s)	33, 289, 299
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	2 cut(s)	426, 867
BstF5I	GGATG	3 cut(s)	231, 857, 919
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	8 cut(s)	107, 244, 719, 739, 784, 889, 991, 1060
BstMAI	GTCTC	3 cut(s)	90, 223, 1017
BstMBI	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
BstNI	CCWGG	3 cut(s)	363, 911, 1051
BstSCI	CCNGG	3 cut(s)	361, 909, 1049
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	2 cut(s)	913, 931
BstV2I	GAAGAC	2 cut(s)	271, 804
BstX2I	RGATCY	1 cut(s)	716
BstXI	CCANNNNNNTGG	2 cut(s)	311, 1019
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	673, 1030
BtsCI	GGATG	3 cut(s)	231, 857, 919
BtsIMutI	CAGTG	2 cut(s)	179, 939
Cac8I	GCNNGC	1 cut(s)	792
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	140
Csp6I	GTAC	5 cut(s)	154, 211, 430, 547, 687
CviAII	CATG	2 cut(s)	214, 785
CviQI	GTAC	5 cut(s)	154, 211, 430, 547, 687
DdeI	CTNAG	2 cut(s)	426, 867
DpnI	GATC	8 cut(s)	106, 243, 718, 738, 783, 888, 990, 1059
DpnII	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
DraI	TTTAAA	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	1000
DseDI	GACNNNNNNGTC	1 cut(s)	1000
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	3 cut(s)	33, 289, 299
EarI	CTCTTC	3 cut(s)	33, 289, 299
Ecl136II	GAGCTC	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	840
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	361, 909, 1049
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	842
FaeI	CATG	2 cut(s)	217, 788
FaqI	GGGAC	2 cut(s)	212, 988
FatI	CATG	2 cut(s)	213, 784
FauNDI	CATATG	1 cut(s)	444
FbaI	TGATCA	2 cut(s)	736, 988
Fnu4HI	GCNGC	2 cut(s)	902, 920
FokI	GGATG	3 cut(s)	218, 844, 926
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	902, 920
FspBI	CTAG	2 cut(s)	492, 791
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	902, 920
GsuI	CTGGAG	2 cut(s)	243, 525
HaeIII	GGCC	2 cut(s)	673, 1030
HapII	CCGG	1 cut(s)	684
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	217, 788
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	5 cut(s)	225, 272, 291, 422, 809
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	2 cut(s)	293, 604
Hpy166II	GTNNAC	1 cut(s)	1041
Hpy188I	TCNGA	1 cut(s)	993
Hpy188III	TCNNGA	7 cut(s)	222, 288, 468, 542, 714, 785, 1074
Hpy8I	GTNNAC	1 cut(s)	1041
HpyAV	CCTTC	4 cut(s)	360, 600, 767, 805
HpyCH4III	ACNGT	3 cut(s)	174, 434, 464
HpyCH4V	TGCA	7 cut(s)	4, 372, 448, 806, 818, 824, 1064
HpyF3I	CTNAG	2 cut(s)	426, 867
Hsp92II	CATG	2 cut(s)	217, 788
HspAI	GCGC	1 cut(s)	138
KpnI	GGTACC	2 cut(s)	157, 690
Ksp22I	TGATCA	2 cut(s)	736, 988
Kzo9I	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	2 cut(s)	913, 931
MaeI	CTAG	2 cut(s)	492, 791
MalI	GATC	8 cut(s)	106, 243, 718, 738, 783, 888, 990, 1059
MboI	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	2 cut(s)	842, 941
MluCI	AATT	3 cut(s)	15, 145, 1069
MlyI	GAGTC	4 cut(s)	234, 266, 285, 818
MmeI	TCCRAC	1 cut(s)	557
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	66, 258, 833
MslI	CAYNNNNRTG	2 cut(s)	927, 1086
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	3 cut(s)	363, 911, 1051
MvaI	CCWGG	3 cut(s)	363, 911, 1051
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	2 cut(s)	217, 788
NlaIV	GGNNCC	3 cut(s)	155, 682, 688
NmeAIII	GCCGAG	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	903, 921
PleI	GAGTC	4 cut(s)	233, 266, 285, 817
PpsI	GAGTC	4 cut(s)	233, 266, 285, 817
Psp124BI	GAGCTC	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	361, 909, 1049
PspGI	CCWGG	3 cut(s)	361, 909, 1049
PspN4I	GGNNCC	3 cut(s)	155, 682, 688
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	5 cut(s)	155, 212, 431, 548, 688
RsaNI	GTAC	5 cut(s)	154, 211, 430, 547, 687
RseI	CAYNNNNRTG	2 cut(s)	927, 1086
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	3 cut(s)	66, 258, 833
SatI	GCNGC	2 cut(s)	902, 920
Sau3AI	GATC	8 cut(s)	104, 241, 716, 736, 781, 886, 988, 1057
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	4 cut(s)	234, 266, 285, 818
ScrFI	CCNGG	3 cut(s)	363, 911, 1051
SduI	GDGCHC	2 cut(s)	842, 941
SfcI	CTRYAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	2 cut(s)	927, 1086
Sse9I	AATT	3 cut(s)	15, 145, 1069
SspMI	CTAG	2 cut(s)	492, 791
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	361, 909, 1049
TaaI	ACNGT	3 cut(s)	174, 434, 464
TasI	AATT	3 cut(s)	15, 145, 1069
TatI	WGTACW	3 cut(s)	210, 429, 546
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	66, 258, 833
Tru9I	TTAA	3 cut(s)	66, 258, 833
TscAI	CASTG	2 cut(s)	179, 946
TseI	GCWGC	2 cut(s)	901, 919
TspDTI	ATGAA	3 cut(s)	633, 636, 1070
TspRI	CASTG	2 cut(s)	179, 946
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	2 cut(s)	492, 791
ZrmI	AGTACT	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.