RchiOBHm_Chr2g0146001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013138
Physical Location & Seq
Reverse (-)
63761560 .. 63762209
650 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGCCTGTTAGCTCCCATTTTAGTCAACTTTCTCTCTTATTGTCCTATAAGACTATTACATCCCCCTATTCTCTCTTCCTCATCACCTTCACAAACATGGCTCAAAATCGTGAGCTCGATCAGCAAACCCGTCCTCTAGCAAACCCAGATAGCCGGATGTCACGTTACCGGATCTCCCTCCGTCGCCGGAAGCTCCCAATGGCCCGCCTCGGAGGCAAGAAGCCGCCACGAGGCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTGAAGTATTTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGACCTCATGGAAGCCGGAGCGAGCTTTGAAACGTTTCAGCAGAAGATATTCATGGAGGCCACGTTTGCAATTCCGATGGGAGTTTCTCTTTCTAGCTACCCCTCTATTCCCGGGTCGGATCGGCCCAGAACCCTTTACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.71

Weight (kDa)

10.77

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 205, 224
AclI AACGTT 1 cut(s) 371
AclWI GGATC 2 cut(s) 179, 465
AcuI CTGAAG 2 cut(s) 299, 305
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 304, 368
AluBI AGCT 7 cut(s) 12, 115, 193, 283, 310, 363, 435
AluI AGCT 7 cut(s) 12, 115, 193, 283, 310, 363, 435
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 179, 465
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 3 cut(s) 201, 396, 461
Asp700I GAANNNNTTC 3 cut(s) 290, 372, 386
AspS9I GGNCC 3 cut(s) 202, 340, 462
AsuC2I CCSGG 2 cut(s) 450, 451
AsuHPI GGTGA 2 cut(s) 76, 346
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 409
BcnI CCSGG 2 cut(s) 450, 451
BfaI CTAG 4 cut(s) 137, 242, 432, 481
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 450, 451
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 202, 340, 462
BmrFI CCNGG 2 cut(s) 450, 451
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 450, 451
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 208, 449
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 208, 449
BseGI GGATG 3 cut(s) 59, 162, 255
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 260
BshFI GGCC 3 cut(s) 203, 398, 463
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 5 cut(s) 154, 169, 187, 354, 450
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 3 cut(s) 203, 398, 463
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 118, 171, 457
BspACI CCGC 2 cut(s) 205, 224
BspANI GGCC 3 cut(s) 203, 398, 463
BspCNI CTCAG 1 cut(s) 261
BspPI GGATC 2 cut(s) 179, 465
BssECI CCNNGG 2 cut(s) 208, 449
BssMI GATC 3 cut(s) 118, 171, 457
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 205, 361
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 59, 162, 255
BstKTI GATC 3 cut(s) 121, 174, 460
BstMBI GATC 3 cut(s) 118, 171, 457
BstMWI GCNNNNNNNGC 3 cut(s) 121, 213, 404
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 448, 449
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 3 cut(s) 203, 398, 463
BtsCI GGATG 3 cut(s) 59, 162, 255
Cac8I GCNNGC 2 cut(s) 205, 361
Cfr13I GGNCC 3 cut(s) 202, 340, 462
Cfr9I CCCGGG 1 cut(s) 449
CseI GACGC 1 cut(s) 223
CviAII CATG 6 cut(s) 97, 238, 298, 331, 346, 391
DdeI CTNAG 1 cut(s) 269
DpnI GATC 3 cut(s) 120, 173, 459
DpnII GATC 3 cut(s) 118, 171, 457
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 2 cut(s) 299, 305
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 6 cut(s) 100, 241, 301, 334, 349, 394
FaiI YATR 7 cut(s) 48, 98, 239, 299, 332, 347, 392
FatI CATG 6 cut(s) 96, 237, 297, 330, 345, 390
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 3 cut(s) 46, 169, 262
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 4 cut(s) 137, 242, 432, 481
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 3 cut(s) 203, 398, 463
HapII CCGG 5 cut(s) 154, 169, 187, 354, 450
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 100, 241, 301, 334, 349, 394
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HinfI GANTC 1 cut(s) 317
HpaII CCGG 5 cut(s) 154, 169, 187, 354, 450
HphI GGTGA 2 cut(s) 76, 346
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 5 cut(s) 212, 257, 266, 414, 457
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 97, 331
HpyCH4IV ACGT 3 cut(s) 163, 371, 401
HpyCH4V TGCA 2 cut(s) 297, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 213, 404
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 3 cut(s) 163, 371, 401
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 100, 241, 301, 334, 349, 394
Kzo9I GATC 3 cut(s) 118, 171, 457
LmnI GCTCC 3 cut(s) 17, 198, 356
LpnPI CCDG 8 cut(s) 18, 159, 167, 182, 200, 367, 463, 478
MaeI CTAG 4 cut(s) 137, 242, 432, 481
MaeII ACGT 3 cut(s) 163, 371, 401
MaeIII GTNAC 2 cut(s) 159, 164
MalI GATC 3 cut(s) 120, 173, 459
MboI GATC 3 cut(s) 118, 171, 457
MboII GAAGA 3 cut(s) 67, 316, 394
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 435
MroXI GAANNNNTTC 3 cut(s) 290, 372, 386
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 5 cut(s) 154, 169, 187, 354, 450
MspR9I CCNGG 2 cut(s) 450, 451
MwoI GCNNNNNNNGC 3 cut(s) 121, 213, 404
NciI CCSGG 2 cut(s) 450, 451
NdeII GATC 3 cut(s) 118, 171, 457
NlaIII CATG 6 cut(s) 100, 241, 301, 334, 349, 394
NmuCI GTSAC 1 cut(s) 159
NspI RCATGY 1 cut(s) 301
PdmI GAANNNNTTC 3 cut(s) 290, 372, 386
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 340
PspPI GGNCC 3 cut(s) 202, 340, 462
PspPPI RGGWCCY 1 cut(s) 340
PsuI RGATCY 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 3 cut(s) 118, 171, 457
Sau96I GGNCC 3 cut(s) 202, 340, 462
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 450, 451
SduI GDGCHC 1 cut(s) 117
SinI GGWCC 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 408
SsiI CCGC 2 cut(s) 205, 224
SspMI CTAG 4 cut(s) 137, 242, 432, 481
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 448, 449
TaiI ACGT 3 cut(s) 166, 374, 404
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 408
TauI GCSGC 1 cut(s) 226
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 379
TspGWI ACGGA 1 cut(s) 170
TspMI CCCGGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 449
XmnI GAANNNNTTC 3 cut(s) 290, 372, 386
XspI CTAG 4 cut(s) 137, 242, 432, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.