RchiOBHm_Chr2g0150861

B-box zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015020
Physical Location & Seq
Reverse (-)
68539032 .. 68541565
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGAAAATACGGTGCAATGCGTGCGAGGTGGCAGAGGCCGAAGTGCTGTGCTGCGCAGACGAGGCAGCCTTATGCTGGGGATGTGACCAGAAGATCCACGCCGCCAACAAGTTAGCCAGTAAGCACCAGAGAGTCCCTCTCTCTTCCTCATCGTCTCCATTGCCCAAGTGCGACTTCTGCCAGGAGACTGTTGGTTACTTCTTCTGTCTAGAGGACCGAGCTTTACTCTGTAGGAAATGCGACGTTGCCATACACACAGCAAACTCCTACGTGTCTAGTCACCAAAGGTTTTTGCTTCCTGGAGTGGAAGTGGGGCTTGAAGCAACTGAACCATGTAACTCCCCCTCTACAAAGGAAAAGTTGAGTTCTGTGGAAACAGTTTCTGAATCAGCATCATCTCCATCAATCCCCAGAAGTGTCATAGATCATTTTAGTACTGGTGAGATAAAAGACACAATTCCTATGCAAATTGGTGGCATTGGGACTCTTGTATCAGACAAGATACCGTTAAACCGAAGTACCACTACCTCTGTGGGTACTATTTCGGGGTGGCTCTTGGAAGAATGTCTTGGATTAACTTATCCTAATCAGAATAACGGAAGCTTGGACACTATGCCATCAAAGGTTTATGGAAGCTACCACGCGTGA

Protein Analysis

215

Amino Acids

23.18

Weight (kDa)

5.5

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 54 - 95 7.4e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78600 AT1G78600
fragaria_vesca FvH4_6g37790
malus_domestica MD09G1155900.v1.1
prunus_persica Prupe.8G109100_v2.0.a1
pyrus_communis pycom09g07470
rosa_chinensis RchiOBHm_Chr2g0150861
rosa_laevigata RLG00000020514
rosa_multiflora Rmu_sc0000185.1_g000012 Rmu_sc0007617.1_g000006
rosa_rugosa Rorug02G0423000
rosa_samantha Rh2AG483300 Rh2BG495700 Rh2CG469600 Rh2DG506600
rosa_wichuraiana Rw2G039610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccII CGCG 1 cut(s) 644
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 88
AfaI GTAC 3 cut(s) 436, 520, 538
AfiI CCNNNNNNNGG 1 cut(s) 75
AflIII ACRYGT 2 cut(s) 270, 642
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 2 cut(s) 180, 298
AjuI GAANNNNNNNTTGG 4 cut(s) 158, 190, 552, 584
AluBI AGCT 3 cut(s) 221, 603, 636
AluI AGCT 3 cut(s) 221, 603, 636
Alw26I GTCTC 2 cut(s) 159, 179
AlwI GGATC 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 51, 65
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 272, 452
AvaII GGWCC 1 cut(s) 214
BaeI ACNNNNGTAYC 4 cut(s) 474, 502, 507, 535
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbvI GCAGC 2 cut(s) 38, 77
BccI CCATC 2 cut(s) 409, 625
BciT130I CCWGG 2 cut(s) 182, 300
BcoDI GTCTC 2 cut(s) 159, 179
BfaI CTAG 2 cut(s) 209, 276
BfmI CTRYAG 1 cut(s) 229
BisI GCNGC 3 cut(s) 52, 66, 102
BlsI GCNGC 3 cut(s) 53, 67, 103
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 182, 300
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 182, 300
BmsI GCATC 1 cut(s) 401
BplI GAGNNNNNCTC 6 cut(s) 121, 153, 123, 155, 210, 242
BpmI CTGGAG 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 117, 442
Bse3DI GCAATG 2 cut(s) 22, 158
BseBI CCWGG 2 cut(s) 182, 300
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 2 cut(s) 22, 158
BseNI ACTGG 2 cut(s) 117, 442
BseXI GCAGC 2 cut(s) 38, 77
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 2 cut(s) 119, 496
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 159, 179
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 119, 496
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 93, 424
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 38
BspFNI CGCG 1 cut(s) 644
BspPI GGATC 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 22, 158
BsrI ACTGG 2 cut(s) 117, 442
BssMI GATC 2 cut(s) 93, 424
Bst2UI CCWGG 2 cut(s) 182, 300
Bst4CI ACNGT 4 cut(s) 12, 190, 379, 507
Bst6I CTCTTC 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 96, 427
BstMAI GTCTC 2 cut(s) 159, 179
BstMBI GATC 2 cut(s) 93, 424
BstMWI GCNNNNNNNGC 3 cut(s) 21, 62, 177
BstNI CCWGG 2 cut(s) 182, 300
BstSCI CCNGG 2 cut(s) 180, 298
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 38, 77
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 435, 519, 537
CviAII CATG 1 cut(s) 333
CviJI RGCY 8 cut(s) 38, 68, 116, 221, 316, 553, 603, 636
CviKI_1 RGCY 8 cut(s) 38, 68, 116, 221, 316, 553, 603, 636
CviQI GTAC 3 cut(s) 435, 519, 537
DpnI GATC 2 cut(s) 95, 426
DpnII GATC 2 cut(s) 93, 424
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 180, 298
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 336
FaiI YATR 7 cut(s) 73, 251, 334, 422, 464, 614, 630
FalI AAGNNNNNCTT 6 cut(s) 158, 190, 300, 332, 552, 584
FaqI GGGAC 2 cut(s) 119, 496
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 3 cut(s) 52, 66, 102
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 52, 66, 102
FspBI CTAG 2 cut(s) 209, 276
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 52, 66, 102
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 38
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 3 cut(s) 132, 386, 484
HphI GGTGA 2 cut(s) 272, 452
Hpy188I TCNGA 3 cut(s) 385, 496, 591
Hpy188III TCNNGA 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 4 cut(s) 12, 190, 379, 507
HpyCH4IV ACGT 2 cut(s) 243, 270
HpyCH4V TGCA 2 cut(s) 15, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 62, 177
HpySE526I ACGT 2 cut(s) 243, 270
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 93, 424
Lsp1109I GCAGC 2 cut(s) 38, 77
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 209, 276
MaeII ACGT 2 cut(s) 243, 270
MaeIII GTNAC 4 cut(s) 83, 194, 278, 335
MalI GATC 2 cut(s) 95, 426
MboI GATC 2 cut(s) 93, 424
MboII GAAGA 4 cut(s) 103, 135, 193, 572
MflI RGATCY 1 cut(s) 93
MluCI AATT 2 cut(s) 456, 468
MluI ACGCGT 1 cut(s) 642
MlyI GAGTC 2 cut(s) 141, 478
MnlI CCTC 8 cut(s) 19, 28, 55, 147, 157, 205, 355, 538
MseI TTAA 2 cut(s) 509, 575
MspR9I CCNGG 2 cut(s) 182, 300
MvaI CCWGG 2 cut(s) 182, 300
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 21, 62, 177
NdeII GATC 2 cut(s) 93, 424
NlaIII CATG 1 cut(s) 336
NmuCI GTSAC 2 cut(s) 83, 278
NsbI TGCGCA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 3 cut(s) 53, 67, 103
PleI GAGTC 2 cut(s) 140, 478
PpsI GAGTC 2 cut(s) 140, 478
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 180, 298
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 180, 298
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 3 cut(s) 436, 520, 538
RsaNI GTAC 3 cut(s) 435, 519, 537
SaqAI TTAA 2 cut(s) 509, 575
SatI GCNGC 3 cut(s) 52, 66, 102
Sau3AI GATC 2 cut(s) 93, 424
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 2 cut(s) 141, 478
ScrFI CCNGG 2 cut(s) 182, 300
SetI ASST 9 cut(s) 30, 223, 246, 273, 290, 530, 605, 627, 638
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 1 cut(s) 229
SinI GGWCC 1 cut(s) 214
Sse9I AATT 2 cut(s) 456, 468
SsiI CCGC 1 cut(s) 102
SspMI CTAG 2 cut(s) 209, 276
StyD4I CCNGG 2 cut(s) 180, 298
TaaI ACNGT 4 cut(s) 12, 190, 379, 507
TaiI ACGT 2 cut(s) 246, 273
TaqII GACCGA 1 cut(s) 231
TasI AATT 2 cut(s) 456, 468
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 509, 575
Tru9I TTAA 2 cut(s) 509, 575
TseFI GTSAC 2 cut(s) 83, 278
TseI GCWGC 2 cut(s) 51, 65
Tsp45I GTSAC 2 cut(s) 83, 278
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 529
XspI CTAG 2 cut(s) 209, 276
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.