RchiOBHm_Chr2g0158671

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013853
Physical Location & Seq
Reverse (-)
74864627 .. 74866997
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
ATGAGTCTAACGCCTCCATATACACAAATTCCTCTCACTCTTACAGTCTCACTCTCACTCTCACTCTCCTCTAGAGTACTGCTGAGTCCAAAAATACCAATGGAGAGAGATCCGAGGAGAGGCAGCAATATCACTGCCTCAATTGCTAACCTTCCAGAATCATTGTTGGGCGATCAACCATCACCACCACCAGGAGGAGGAGGCAGGGCGTTTCCAACCATGCCTGGGTCGGAGTTTGCCCGATCCATTTACGCCGACCCGGCCAGAAGGGAGGTAGAGCAGTTGATTGAGGAGCTTAACGATCGTCGTACCCGAGAACAGGCTCTACAAGGTTTTAGAGTCTCAGTTTTGATGCTGAAGGAGGTTCCTGACGTGGCTCTATTACTGTGGCATACCAGTGGTCTCATGTTTATGCTCCTAAGGGAAATAACTGGTGTATACCACCTGATGTCAACCCCAAATCTTACTCAGGAAGTATCAAACCGAGTTTGCAATACCATAACTCTGTTTCAGTGTATAGCTTCTCATCTAGAGACAAGAAAGCCATTTATCAGAGCTAGCATGCCATTGTATCTCTACCCTTTCATTGGCACTGAGAACAAGGACAAGCCTCATGAATATCTCAGACTATCCAGCTTAGGTGCTCTTGGGGCCCTAGTGAAGGGTCACCCACCAAGTAGAGACGAAGTTGATCCAGAAATTATACATTTCCTCCTAGAAAGCCAGGTATTTTGCCACTGCATCCGCTGCATGGAAGTTGGCGGTGTATTGTCAAGAACTGTGGCTACATTTGTAGTTGAAAGAATTCTGACAACTGATGAGGGACTCAACTACTGCTGCAATTTCGGGGATCGGTTTTATGTAGTAACTCATGTTCTTGGAAAGATGACTGATAAGCTTCTTGAAGAACCTTCTGCCCGCCTGCTTAAACTTATCATAAAGTGCTTTCTTATACTGTCGAGAGGTCCAAGGTATGCAATGACTAATGAGATTATTCTCAATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

335

Amino Acids

37.53

Weight (kDa)

7.61

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 95 - 325 2.2e-75 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 438
AciI CCGC 3 cut(s) 745, 762, 919
AclWI GGATC 4 cut(s) 104, 237, 686, 858
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 2 cut(s) 27, 804
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 2 cut(s) 78, 310
AfiI CCNNNNNNNGG 9 cut(s) 119, 191, 194, 197, 225, 319, 587, 661, 751
AgsI TTSAA 2 cut(s) 800, 905
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 3 cut(s) 190, 223, 723
AluBI AGCT 5 cut(s) 295, 521, 557, 636, 898
AluI AGCT 5 cut(s) 295, 521, 557, 636, 898
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 5 cut(s) 52, 346, 407, 527, 675
AlwI GGATC 4 cut(s) 104, 237, 686, 858
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 2 cut(s) 261, 651
ApaI GGGCCC 1 cut(s) 655
ApeKI GCWGC 3 cut(s) 123, 747, 837
ApoI RAATTY 2 cut(s) 27, 804
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 3 cut(s) 651, 652, 965
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 174, 659
AsuNHI GCTAGC 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 965
AxyI CCTNAGG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 3 cut(s) 135, 734, 824
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 3 cut(s) 192, 225, 725
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 5 cut(s) 52, 346, 407, 527, 675
BfaI CTAG 5 cut(s) 72, 530, 558, 656, 716
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 3 cut(s) 124, 748, 838
BlsI GCNGC 3 cut(s) 125, 749, 839
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 4 cut(s) 192, 225, 260, 725
Bme18I GGWCC 1 cut(s) 965
BmeT110I CYCGRG 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 3 cut(s) 651, 652, 965
BmiI GGNNCC 3 cut(s) 366, 652, 653
BmrFI CCNGG 4 cut(s) 192, 225, 260, 725
BmsI GCATC 2 cut(s) 342, 750
BmtI GCTAGC 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 113, 224, 968
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 9 cut(s) 119, 191, 194, 197, 225, 319, 587, 661, 751
Bse1I ACTGG 2 cut(s) 396, 436
Bse21I CCTNAGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 3 cut(s) 192, 225, 725
BseDI CCNNGG 3 cut(s) 113, 224, 968
BseGI GGATG 1 cut(s) 741
BseLI CCNNNNNNNGG 9 cut(s) 119, 191, 194, 197, 225, 319, 587, 661, 751
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 5 cut(s) 74, 357, 482, 585, 637
BseNI ACTGG 2 cut(s) 396, 436
BseRI GAGGAG 5 cut(s) 58, 130, 210, 213, 305
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 3 cut(s) 135, 734, 824
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 263, 653
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 9 cut(s) 119, 191, 194, 197, 225, 319, 587, 661, 751
BsmAI GTCTC 5 cut(s) 52, 346, 407, 527, 675
BsmBI CGTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 2 cut(s) 263, 653
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 312
Bsp120I GGGCCC 1 cut(s) 651
Bsp1286I GDGCHC 2 cut(s) 646, 655
Bsp143I GATC 6 cut(s) 109, 172, 242, 301, 691, 850
BspACI CCGC 3 cut(s) 745, 762, 919
BspANI GGCC 2 cut(s) 263, 653
BspCNI CTCAG 5 cut(s) 75, 356, 481, 586, 636
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 366, 652, 653
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 4 cut(s) 104, 237, 686, 858
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 2 cut(s) 396, 436
BssECI CCNNGG 3 cut(s) 113, 224, 968
BssMI GATC 6 cut(s) 109, 172, 242, 301, 691, 850
BssNAI GTATAC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 968
Bst1107I GTATAC 1 cut(s) 439
Bst2UI CCWGG 3 cut(s) 192, 225, 725
Bst4CI ACNGT 4 cut(s) 46, 387, 781, 957
BstAPI GCANNNNNTGC 1 cut(s) 747
BstC8I GCNNGC 4 cut(s) 559, 563, 919, 923
BstDEI CTNAG 7 cut(s) 83, 343, 419, 468, 594, 623, 637
BstEII GGTNACC 1 cut(s) 665
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 1 cut(s) 741
BstKTI GATC 6 cut(s) 112, 175, 245, 304, 694, 853
BstMAI GTCTC 5 cut(s) 52, 346, 407, 527, 675
BstMBI GATC 6 cut(s) 109, 172, 242, 301, 691, 850
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 143, 260, 650, 747
BstNI CCWGG 3 cut(s) 192, 225, 725
BstNSI RCATGY 1 cut(s) 565
BstPI GGTNACC 1 cut(s) 665
BstSCI CCNGG 4 cut(s) 190, 223, 258, 723
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 3 cut(s) 135, 734, 824
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BstZ17I GTATAC 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 419
BsuRI GGCC 2 cut(s) 263, 653
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 741
BtsI GCAGTG 2 cut(s) 132, 736
BtsIMutI CAGTG 5 cut(s) 132, 403, 518, 591, 736
Cac8I GCNNGC 4 cut(s) 559, 563, 919, 923
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 651, 652, 965
Csp6I GTAC 2 cut(s) 77, 309
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 6 cut(s) 220, 406, 562, 614, 751, 872
CviQI GTAC 2 cut(s) 77, 309
DdeI CTNAG 7 cut(s) 83, 343, 419, 468, 594, 623, 637
DpnI GATC 6 cut(s) 111, 174, 244, 303, 693, 852
DpnII GATC 6 cut(s) 109, 172, 242, 301, 691, 850
EaeI YGGCCR 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 968
Eco24I GRGCYC 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 1 cut(s) 377
Eco81I CCTNAGG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 665
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoO109I RGGNCCY 2 cut(s) 651, 652
EcoO65I GGTNACC 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 3 cut(s) 190, 223, 723
EcoT14I CCWWGG 1 cut(s) 968
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 968
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 6 cut(s) 223, 409, 565, 617, 754, 875
FaqI GGGAC 1 cut(s) 837
FatI CATG 6 cut(s) 219, 405, 561, 613, 750, 871
FauI CCCGC 1 cut(s) 926
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 124, 748, 838
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 3 cut(s) 124, 748, 838
FspBI CTAG 5 cut(s) 72, 530, 558, 656, 716
GluI GCNGC 3 cut(s) 124, 748, 838
HaeIII GGCC 2 cut(s) 263, 653
HapII CCGG 1 cut(s) 260
Hin1II CATG 6 cut(s) 223, 409, 565, 617, 754, 875
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 5 cut(s) 4, 85, 158, 339, 825
HpaII CCGG 1 cut(s) 260
HphI GGTGA 2 cut(s) 174, 659
Hpy166II GTNNAC 2 cut(s) 439, 453
Hpy188I TCNGA 5 cut(s) 114, 232, 554, 626, 810
Hpy8I GTNNAC 2 cut(s) 439, 453
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 5 cut(s) 161, 261, 352, 655, 921
HpyCH4III ACNGT 4 cut(s) 46, 387, 781, 957
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 492, 741, 750, 840, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 260, 650, 747
HpyF3I CTNAG 7 cut(s) 83, 343, 419, 468, 594, 623, 637
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 6 cut(s) 223, 409, 565, 617, 754, 875
Kzo9I GATC 6 cut(s) 109, 172, 242, 301, 691, 850
LmnI GCTCC 2 cut(s) 292, 420
Lsp1109I GCAGC 3 cut(s) 135, 734, 824
LweI GCATC 2 cut(s) 342, 750
MaeI CTAG 5 cut(s) 72, 530, 558, 656, 716
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 665, 865
MalI GATC 6 cut(s) 111, 174, 244, 303, 693, 852
MboI GATC 6 cut(s) 109, 172, 242, 301, 691, 850
MboII GAAGA 1 cut(s) 917
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 646, 655
MluCI AATT 5 cut(s) 27, 141, 699, 804, 841
MlyI GAGTC 4 cut(s) 13, 94, 348, 819
MmeI TCCRAC 2 cut(s) 210, 239
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 3 cut(s) 297, 927, 1006
MslI CAYNNNNRTG 2 cut(s) 396, 410
MspA1I CMGCKG 1 cut(s) 747
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 4 cut(s) 192, 225, 260, 725
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 3 cut(s) 192, 225, 725
MwoI GCNNNNNNNGC 4 cut(s) 143, 260, 650, 747
NciI CCSGG 1 cut(s) 260
NdeII GATC 6 cut(s) 109, 172, 242, 301, 691, 850
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 6 cut(s) 223, 409, 565, 617, 754, 875
NlaIV GGNNCC 3 cut(s) 366, 652, 653
NmuCI GTSAC 1 cut(s) 665
NspI RCATGY 1 cut(s) 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 125, 749, 839
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 4 cut(s) 12, 93, 347, 819
PpsI GAGTC 4 cut(s) 12, 93, 347, 819
Psp6I CCWGG 3 cut(s) 190, 223, 723
PspEI GGTNACC 1 cut(s) 665
PspGI CCWGG 3 cut(s) 190, 223, 723
PspN4I GGNNCC 3 cut(s) 366, 652, 653
PspOMI GGGCCC 1 cut(s) 651
PspPI GGNCC 3 cut(s) 651, 652, 965
PsrI GAACNNNNNNTAC 6 cut(s) 309, 341, 769, 801, 858, 890
PsuI RGATCY 1 cut(s) 109
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 2 cut(s) 78, 310
RsaNI GTAC 2 cut(s) 77, 309
RseI CAYNNNNRTG 2 cut(s) 396, 410
SaqAI TTAA 3 cut(s) 297, 927, 1006
SatI GCNGC 3 cut(s) 124, 748, 838
Sau3AI GATC 6 cut(s) 109, 172, 242, 301, 691, 850
Sau96I GGNCC 3 cut(s) 651, 652, 965
ScaI AGTACT 1 cut(s) 78
SchI GAGTC 4 cut(s) 13, 94, 348, 819
ScrFI CCNGG 4 cut(s) 192, 225, 260, 725
SduI GDGCHC 2 cut(s) 646, 655
SfaNI GCATC 2 cut(s) 342, 750
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 396, 410
SphI GCATGC 1 cut(s) 565
Sse9I AATT 5 cut(s) 27, 141, 699, 804, 841
SsiI CCGC 3 cut(s) 745, 762, 919
SspMI CTAG 5 cut(s) 72, 530, 558, 656, 716
StyD4I CCNGG 4 cut(s) 190, 223, 258, 723
StyI CCWWGG 1 cut(s) 968
TaaI ACNGT 4 cut(s) 46, 387, 781, 957
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 959
TasI AATT 5 cut(s) 27, 141, 699, 804, 841
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 297, 927, 1006
Tru9I TTAA 3 cut(s) 297, 927, 1006
TscAI CASTG 5 cut(s) 139, 403, 518, 598, 743
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 3 cut(s) 123, 747, 837
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 574, 630
TspRI CASTG 5 cut(s) 139, 403, 518, 598, 743
VpaK11BI GGWCC 1 cut(s) 965
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 2 cut(s) 27, 804
XbaI TCTAGA 2 cut(s) 71, 529
XceI RCATGY 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 5 cut(s) 72, 530, 558, 656, 716
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.