E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g03300 pycom04g03380 |
| rosa_chinensis | RchiOBHm_Chr2g0127701 RchiOBHm_Chr2g0166791 RchiOBHm_Chr6g0267371 |
| rosa_samantha | Rh2AG323700 Rh2AG398600 Rh2AG592500 Rh2BG332900 Rh2BG604000 Rh2CG385400 Rh2CG574900 |
| rosa_wichuraiana | Rw2G026270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AluBI | AGCT | 1 cut(s) | 118 |
| AluI | AGCT | 1 cut(s) | 118 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 91 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 103 |
| BccI | CCATC | 1 cut(s) | 39 |
| BfaI | CTAG | 2 cut(s) | 17, 80 |
| BisI | GCNGC | 1 cut(s) | 92 |
| BlpI | GCTNAGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 93 |
| BmsI | GCATC | 1 cut(s) | 115 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| BseMII | CTCAG | 1 cut(s) | 110 |
| BseXI | GCAGC | 1 cut(s) | 103 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 1 cut(s) | 132 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 119 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 111 |
| BssMI | GATC | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstEII | GGTNACC | 1 cut(s) | 49 |
| BstKTI | GATC | 1 cut(s) | 135 |
| BstMBI | GATC | 1 cut(s) | 132 |
| BstPI | GGTNACC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviJI | RGCY | 3 cut(s) | 5, 118, 149 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 118, 149 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 1 cut(s) | 134 |
| DpnII | GATC | 1 cut(s) | 132 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco91I | GGTNACC | 1 cut(s) | 49 |
| EcoO65I | GGTNACC | 1 cut(s) | 49 |
| FaiI | YATR | 1 cut(s) | 188 |
| Fnu4HI | GCNGC | 1 cut(s) | 92 |
| Fsp4HI | GCNGC | 1 cut(s) | 92 |
| FspBI | CTAG | 2 cut(s) | 17, 80 |
| GluI | GCNGC | 1 cut(s) | 92 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hpy166II | GTNNAC | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 66, 110, 130 |
| Hpy8I | GTNNAC | 1 cut(s) | 27 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 2 cut(s) | 91, 106 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| Kzo9I | GATC | 1 cut(s) | 132 |
| LpnPI | CCDG | 4 cut(s) | 79, 121, 131, 138 |
| Lsp1109I | GCAGC | 1 cut(s) | 103 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 2 cut(s) | 17, 80 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 1 cut(s) | 134 |
| MboI | GATC | 1 cut(s) | 132 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 2 cut(s) | 15, 172 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| NdeII | GATC | 1 cut(s) | 132 |
| PkrI | GCNGC | 1 cut(s) | 93 |
| PspEI | GGTNACC | 1 cut(s) | 49 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| SatI | GCNGC | 1 cut(s) | 92 |
| Sau3AI | GATC | 1 cut(s) | 132 |
| SetI | ASST | 3 cut(s) | 26, 120, 183 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SspMI | CTAG | 2 cut(s) | 17, 80 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TseI | GCWGC | 1 cut(s) | 91 |
| XbaI | TCTAGA | 1 cut(s) | 16 |
| XspI | CTAG | 2 cut(s) | 17, 80 |