RchiOBHm_Chr1g0313251

Cyclic pyranopterin monophosphate synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
372853 .. 377148
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGATGAAGCGCCATCTATCAAAGCTTCCCCACTTGCGTACAGGCTTTGGAAATTTCAATTCTTTCCTGTGCTCATGCTTTGAAACTGGGTCCACCAGTGGTGACGCCAAGGGCTTTCTTCATCAGCAAATGCGAATGAATGGCTCCCCTTATGCAACTTGTTGTGCCAAGTTGCCGGAGGAGCTTCCAAAAGATAATCCTGTTTCCAATATGTTGATTGATTCTTTTGGAAGGCAGCACACTTACTTGAGGATCTCTTTAACAGAGCGTTGCAATCTGCGATGTCAATACTGCATGCCGGCCGAGGGTGTCAGCCTCACTCCTGGCCCCCAAATTCTCTCGCAGAATGAGCTTGTTCGCTTGGCTAATCTGTTTGTAAGCTCCGGAGTCAATAAAATTCGTTTGACTGGAGGGGAGCCAACTGTCAGGAAAGATATTGAAGACATATGCTTGCACTTTTCTAACTTGAAGGGACTGAAAACACTGGCTATCACTACTAATGGAATCACTCTTGCACGAAAACTTCCCAAGTTGAAAGAATGCGGCCTTAGTGCGGTGAATATTAGTTTAGACACCTTGGTCCCTGCAAAGTTTGAATTTCTGACCAGGCGTAGAGGGCATGAAAGGGTTATGGACTCAATTAATGCTGCCATAGACCTCGGTTATAATCCTGTTAAGGTAAATTGCGTTATAATGCGTGGGTTCAATGATGATGAGATTTGCAATTTCGTAGAGCTGACACGTGAAAAGCCAATTAACATTCGATTCATTGAGTTCATGCCTTTTGATGGAAATGTATGGAATGTTAAGAAACTTGTACCCTACGCAGAAATGTTGGATAGAGTGGCAAAACATTTTACAGGCCTAAAAAGACTTCAGGATCACCCAACTGATACTGCCAAGAACTTCAGGATAGATGATCATCTTGGTACAGTTTCTTTTATCACATCAATGACTGAGCATTTTTGTGCTGGTTGCAATAGATTGCGACTCTTAGCTGATGGGAACTTCAAAGTTTGCTTGTTTGGTCCTTCAGAGGTCAGCTTAAGAGATCCCCTTCGGCAGGGTGCTGATGATCATGAACTAAGGGAAATAATTGGTTCAGCGGTGAAGAGGAAGAAGGCTTCGCATGCTGGAATGTTTGACATTGCAAAGACAGCAAATAGGCCCATGATACATATTGGTGGCTAA

Protein Analysis

396

Amino Acids

44.36

Weight (kDa)

9.09

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 85 - 246 1.1e-33 Radical SAM superfamily
Mob_synth_C PF06463 252 - 378 1.9e-37 Molybdenum Cofactor Synthesis C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 666, 692
AasI GACNNNNNNGTC 1 cut(s) 578
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 3 cut(s) 543, 554, 1106
AclWI GGATC 3 cut(s) 260, 888, 1046
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 4 cut(s) 52, 333, 396, 596
AcuI CTGAAG 3 cut(s) 860, 892, 1017
AcvI CACGTG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 3 cut(s) 40, 819, 931
AfiI CCNNNNNNNGG 4 cut(s) 305, 553, 788, 1063
AflII CTTAAG 1 cut(s) 1045
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 8 cut(s) 58, 83, 440, 469, 535, 596, 706, 1012
AjnI CCWGG 2 cut(s) 322, 605
AluBI AGCT 7 cut(s) 25, 184, 352, 381, 736, 998, 1044
AluI AGCT 7 cut(s) 25, 184, 352, 381, 736, 998, 1044
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 3 cut(s) 260, 888, 1046
Aor13HI TCCGGA 1 cut(s) 383
AoxI GGCC 5 cut(s) 300, 325, 544, 862, 1166
ApeKI GCWGC 2 cut(s) 235, 647
ApoI RAATTY 4 cut(s) 52, 333, 396, 596
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 5 cut(s) 90, 326, 580, 1028, 1167
AsuHPI GGTGA 4 cut(s) 113, 568, 875, 1120
AvaII GGWCC 3 cut(s) 90, 580, 1028
BbrPI CACGTG 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 247, 634
BccI CCATC 3 cut(s) 21, 782, 995
BciT130I CCWGG 2 cut(s) 324, 607
BclI TGATCA 2 cut(s) 919, 1075
BfoI RGCGCY 1 cut(s) 13
BfrI CTTAAG 1 cut(s) 1045
BisI GCNGC 3 cut(s) 236, 544, 648
BlsI GCNGC 3 cut(s) 237, 545, 649
Bme1390I CCNGG 2 cut(s) 324, 607
Bme18I GGWCC 3 cut(s) 90, 580, 1028
BmgT120I GGNCC 5 cut(s) 90, 326, 580, 1028, 1167
BmiI GGNNCC 5 cut(s) 91, 145, 328, 417, 582
BmrFI CCNGG 2 cut(s) 324, 607
BmrI ACTGGG 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 743
BsaBI GATNNNNATC 1 cut(s) 921
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 4 cut(s) 108, 303, 576, 658
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 553, 788, 1063
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 4 cut(s) 91, 96, 412, 489
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 383
BseBI CCWGG 2 cut(s) 324, 607
BseDI CCNNGG 4 cut(s) 108, 303, 576, 658
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 4 cut(s) 305, 553, 788, 1063
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 4 cut(s) 91, 96, 412, 489
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 247, 634
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 302, 327, 546, 864, 1168
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 176, 299, 384
BslFI GGGAC 2 cut(s) 486, 566
BslI CCNNNNNNNGG 4 cut(s) 305, 553, 788, 1063
BsmFI GGGAC 2 cut(s) 486, 566
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 5 cut(s) 302, 327, 546, 864, 1168
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 5 cut(s) 252, 880, 919, 1051, 1075
BspACI CCGC 3 cut(s) 543, 554, 1106
BspANI GGCC 5 cut(s) 302, 327, 546, 864, 1168
BspCNI CTCAG 1 cut(s) 949
BspEI TCCGGA 1 cut(s) 383
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 5 cut(s) 91, 145, 328, 417, 582
BspPI GGATC 3 cut(s) 260, 888, 1046
BspTI CTTAAG 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 1146
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 4 cut(s) 91, 96, 412, 489
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 4 cut(s) 108, 303, 576, 658
BssMI GATC 5 cut(s) 252, 880, 919, 1051, 1075
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 108, 576
Bst2UI CCWGG 2 cut(s) 324, 607
Bst4CI ACNGT 2 cut(s) 424, 934
Bst6I CTCTTC 1 cut(s) 1106
BstACI GRCGYC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 1045
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 4 cut(s) 296, 300, 452, 1131
BstDEI CTNAG 4 cut(s) 548, 957, 994, 1085
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 255, 883, 922, 1054, 1078
BstMBI GATC 5 cut(s) 252, 880, 919, 1051, 1075
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 181, 349, 616, 1130, 1157
BstNI CCWGG 2 cut(s) 324, 607
BstNSI RCATGY 2 cut(s) 298, 1133
BstSCI CCNGG 2 cut(s) 322, 605
BstV1I GCAGC 2 cut(s) 247, 634
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 252, 1051
BstYI RGATCY 2 cut(s) 252, 1051
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 5 cut(s) 302, 327, 546, 864, 1168
BtgZI GCGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 103, 482
Cac8I GCNNGC 4 cut(s) 296, 300, 452, 1131
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 5 cut(s) 90, 326, 580, 1028, 1167
CseI GACGC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 39, 818, 930
CviAII CATG 7 cut(s) 75, 295, 620, 778, 1079, 1130, 1171
CviQI GTAC 3 cut(s) 39, 818, 930
DdeI CTNAG 4 cut(s) 548, 957, 994, 1085
DpnI GATC 5 cut(s) 254, 882, 921, 1053, 1077
DpnII GATC 5 cut(s) 252, 880, 919, 1051, 1075
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
EaeI YGGCCR 1 cut(s) 300
EagI CGGCCG 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 1106
EarI CTCTTC 1 cut(s) 1106
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 108, 576
Eco147I AGGCCT 1 cut(s) 864
Eco47I GGWCC 3 cut(s) 90, 580, 1028
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 3 cut(s) 860, 892, 1017
Eco72I CACGTG 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 322, 605
EcoT14I CCWWGG 2 cut(s) 108, 576
ErhI CCWWGG 2 cut(s) 108, 576
FaeI CATG 7 cut(s) 78, 298, 623, 781, 1082, 1133, 1174
FaqI GGGAC 2 cut(s) 486, 566
FatI CATG 7 cut(s) 74, 294, 619, 777, 1078, 1129, 1170
FauNDI CATATG 1 cut(s) 446
FbaI TGATCA 2 cut(s) 919, 1075
Fnu4HI GCNGC 3 cut(s) 236, 544, 648
Fsp4HI GCNGC 3 cut(s) 236, 544, 648
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 236, 544, 648
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 5 cut(s) 302, 327, 546, 864, 1168
HapII CCGG 3 cut(s) 176, 299, 384
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 7 cut(s) 78, 298, 623, 781, 1082, 1133, 1174
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 221, 387, 504, 635, 765, 990
HpaII CCGG 3 cut(s) 176, 299, 384
HphI GGTGA 4 cut(s) 113, 568, 875, 1120
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 603, 1036
Hpy188III TCNNGA 5 cut(s) 384, 427, 878, 910, 1079
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 5 cut(s) 225, 463, 1041, 1067, 1114
HpyCH4III ACNGT 2 cut(s) 424, 934
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 9 cut(s) 155, 273, 294, 454, 515, 587, 723, 978, 1151
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 349, 616, 1130, 1157
HpyF3I CTNAG 4 cut(s) 548, 957, 994, 1085
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 7 cut(s) 78, 298, 623, 781, 1082, 1133, 1174
HspAI GCGC 1 cut(s) 10
Kpn2I TCCGGA 1 cut(s) 383
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Ksp22I TGATCA 2 cut(s) 919, 1075
Kzo9I GATC 5 cut(s) 252, 880, 919, 1051, 1075
LmnI GCTCC 4 cut(s) 149, 181, 386, 415
Lsp1109I GCAGC 2 cut(s) 247, 634
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 1 cut(s) 101
MalI GATC 5 cut(s) 254, 882, 921, 1053, 1077
MboI GATC 5 cut(s) 252, 880, 919, 1051, 1075
MboII GAAGA 4 cut(s) 110, 452, 1123, 1129
MflI RGATCY 2 cut(s) 252, 1051
MhlI GDGCHC 1 cut(s) 74
MlyI GAGTC 3 cut(s) 396, 629, 984
MmeI TCCRAC 1 cut(s) 816
MnlI CCTC 9 cut(s) 172, 243, 298, 326, 404, 608, 668, 1030, 1107
MroI TCCGGA 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 6 cut(s) 260, 642, 675, 756, 807, 1046
MslI CAYNNNNRTG 3 cut(s) 950, 966, 1182
MspA1I CMGCKG 1 cut(s) 1106
MspCI CTTAAG 1 cut(s) 1045
MspI CCGG 3 cut(s) 176, 299, 384
MspR9I CCNGG 2 cut(s) 324, 607
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 2 cut(s) 324, 607
MwoI GCNNNNNNNGC 5 cut(s) 181, 349, 616, 1130, 1157
NaeI GCCGGC 1 cut(s) 300
NdeI CATATG 1 cut(s) 446
NdeII GATC 5 cut(s) 252, 880, 919, 1051, 1075
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 7 cut(s) 78, 298, 623, 781, 1082, 1133, 1174
NlaIV GGNNCC 5 cut(s) 91, 145, 328, 417, 582
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 2 cut(s) 298, 1133
PaeI GCATGC 2 cut(s) 298, 1133
PagI TCATGA 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 864
PctI GAATGC 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 221, 504, 765
PkrI GCNGC 3 cut(s) 237, 545, 649
PleI GAGTC 3 cut(s) 395, 629, 984
PmaCI CACGTG 1 cut(s) 743
PmlI CACGTG 1 cut(s) 743
PpsI GAGTC 3 cut(s) 395, 629, 984
Ppu21I YACGTR 1 cut(s) 743
PshBI ATTAAT 1 cut(s) 642
PsiI TTATAA 2 cut(s) 666, 692
Psp6I CCWGG 2 cut(s) 322, 605
PspCI CACGTG 1 cut(s) 743
PspGI CCWGG 2 cut(s) 322, 605
PspN4I GGNNCC 5 cut(s) 91, 145, 328, 417, 582
PspPI GGNCC 5 cut(s) 90, 326, 580, 1028, 1167
PsuI RGATCY 2 cut(s) 252, 1051
RsaI GTAC 3 cut(s) 40, 819, 931
RsaNI GTAC 3 cut(s) 39, 818, 930
RseI CAYNNNNRTG 3 cut(s) 950, 966, 1182
SaqAI TTAA 6 cut(s) 260, 642, 675, 756, 807, 1046
SatI GCNGC 3 cut(s) 236, 544, 648
Sau3AI GATC 5 cut(s) 252, 880, 919, 1051, 1075
Sau96I GGNCC 5 cut(s) 90, 326, 580, 1028, 1167
SchI GAGTC 3 cut(s) 396, 629, 984
ScrFI CCNGG 2 cut(s) 324, 607
SduI GDGCHC 1 cut(s) 74
SinI GGWCC 3 cut(s) 90, 580, 1028
SmiMI CAYNNNNRTG 3 cut(s) 950, 966, 1182
SmlI CTYRAG 2 cut(s) 247, 1045
SmoI CTYRAG 2 cut(s) 247, 1045
SphI GCATGC 2 cut(s) 298, 1133
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 3 cut(s) 543, 554, 1106
SspI AATATT 1 cut(s) 562
StuI AGGCCT 1 cut(s) 864
StyD4I CCNGG 2 cut(s) 322, 605
StyI CCWWGG 2 cut(s) 108, 576
TaaI ACNGT 2 cut(s) 424, 934
TaiI ACGT 1 cut(s) 745
TaqI TCGA 1 cut(s) 763
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 3 cut(s) 221, 504, 765
Tru1I TTAA 6 cut(s) 260, 642, 675, 756, 807, 1046
Tru9I TTAA 6 cut(s) 260, 642, 675, 756, 807, 1046
TscAI CASTG 2 cut(s) 103, 489
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 235, 647
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 7 cut(s) 20, 110, 152, 636, 757, 766, 1095
TspRI CASTG 2 cut(s) 103, 489
Vha464I CTTAAG 1 cut(s) 1045
VpaK11BI GGWCC 3 cut(s) 90, 580, 1028
VspI ATTAAT 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 4 cut(s) 52, 333, 396, 596
XceI RCATGY 2 cut(s) 298, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.