RchiOBHm_Chr1g0315961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012261
Physical Location & Seq
Forward (+)
3082934 .. 3086541
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
ATGGAGCATGATCATGAAGCAGCTCTATTCCATTCATACCCTGCCTGTGCATACTACGTCCAGAGCCCATCCACCATCTCCCATGCTAACAGCGCCCATATCCGAAACAGCACCATCCCCGAATCCGAATTCCAATTCAACTCCCCCGCCCGACCCGACCCAACAAACCCTACCCTTCAGGAGCAGGAAGTAGCCTCTCGAGCCTTTACTCTCTCGCACTACTCCTCCTCTCGAGGATCCAGCCACTCCTTCTTGCATCACCAGAAAAAGATCTCTTACGATGCAGGTAGCCACGAAAATGGTGAGAACCGTTTGATTATTTTGGATGCCGGCGGCGATGATATTCATAATGGTGATGGTCGTGAAGATGATGATGAATATGATCATTACGGGATGAAGAAAAGATCAGGGTGGTGGAAGAGGTACTGTTCGTACCGGAATTCGGACTCGTGTGTGTGGATTTTCATGCAAATTAGTTGGAGGGCTATCTTGAGCTTCTGGGTTGCATTGCTTGTGTTTTATATCGCCACAAAGCCACCTCCACCCAAAGTATCTATTAAGATGGCAGGAATAGGGCAATTTGGGTTAGGGGAAGGAGTTGATGGTTCAGGTGTTTCAACTAAGTTCCTAACCTGCAATTGTTCCATAGACCTAATAATAGAGAACAAGTCTAAGCTCTTTGGACTTCGAATTCGTCCTCCAATGATGGACGTCTCCTTCGGCCGCCTGTCTTTTGCATCATCACATGGACCAAAGCTATATGCAGAACATGGGTCAACAAAGTTCAAGTTATATGTGGGAACAAGAAACAGGCCTATGTATGGTGCTGGAAGAAGCATGGAGGACATGTTAGAGTCAGGCAAAGGTTTGCCTTTGGTGGTTCGAGTCAGATTGCGCTCAAGTTTTCAAGTCGTTTGGAATCTGATAAAGCCTAAGTTCCATCACCAAGCTCAGTGCTCATTAGTCCTTGATCGGGCTTACGACAAAAGACATCGAACTCAGGCCTACAACAGCACCTGTATAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.75

Weight (kDa)

8.95

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 714
Acc36I ACCTGC 2 cut(s) 275, 641
AciI CCGC 3 cut(s) 147, 333, 724
AclWI GGATC 2 cut(s) 231, 244
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 3 cut(s) 128, 439, 690
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 2 cut(s) 425, 434
AfiI CCNNNNNNNGG 3 cut(s) 442, 821, 973
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 4 cut(s) 139, 618, 787, 908
AluBI AGCT 5 cut(s) 23, 495, 676, 757, 950
AluI AGCT 5 cut(s) 23, 495, 676, 757, 950
Alw21I GWGCWC 1 cut(s) 959
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 2 cut(s) 231, 244
AlwNI CAGNNNCTG 1 cut(s) 1017
Ama87I CYCGRG 2 cut(s) 198, 231
AoxI GGCC 3 cut(s) 721, 812, 1002
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 128, 439, 690
ArsI GACNNNNNNTTYG 4 cut(s) 675, 701, 707, 733
AspLEI GCGC 2 cut(s) 95, 897
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 4 cut(s) 251, 314, 365, 935
AsuII TTCGAA 1 cut(s) 688
AvaI CYCGRG 2 cut(s) 198, 231
AvaII GGWCC 1 cut(s) 749
BamHI GGATCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 959
BbvI GCAGC 1 cut(s) 32
BccI CCATC 8 cut(s) 76, 83, 122, 350, 556, 596, 700, 948
BclI TGATCA 2 cut(s) 10, 382
BcoDI GTCTC 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 2 cut(s) 275, 641
BglII AGATCT 1 cut(s) 270
BisI GCNGC 3 cut(s) 21, 334, 724
BlsI GCNGC 3 cut(s) 22, 335, 725
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 2 cut(s) 198, 231
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 4 cut(s) 265, 271, 316, 746
Bpu14I TTCGAA 1 cut(s) 688
BpuEI CTTGAG 2 cut(s) 511, 883
BsaHI GRCGYC 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 833, 863
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 821, 973
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 506
BseGI GGATG 4 cut(s) 68, 114, 331, 399
BseLI CCNNNNNNNGG 3 cut(s) 442, 821, 973
BseMI GCAATG 1 cut(s) 506
BseMII CTCAG 2 cut(s) 965, 1013
BseRI GAGGAG 2 cut(s) 214, 217
BseX3I CGGCCG 1 cut(s) 721
BseXI GCAGC 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 724
BshFI GGCC 3 cut(s) 723, 814, 1004
BsiEI CGRYCG 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 959
BsiHKCI CYCGRG 2 cut(s) 198, 231
BsiSI CCGG 2 cut(s) 330, 436
BslI CCNNNNNNNGG 3 cut(s) 442, 821, 973
BsmAI GTCTC 1 cut(s) 718
BsmBI CGTCTC 1 cut(s) 718
BsnI GGCC 3 cut(s) 723, 814, 1004
BsoBI CYCGRG 2 cut(s) 198, 231
Bsp119I TTCGAA 1 cut(s) 688
Bsp1286I GDGCHC 2 cut(s) 68, 959
Bsp143I GATC 6 cut(s) 10, 236, 270, 382, 404, 970
BspACI CCGC 3 cut(s) 147, 333, 724
BspANI GGCC 3 cut(s) 723, 814, 1004
BspCNI CTCAG 2 cut(s) 964, 1012
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 238
BspMI ACCTGC 2 cut(s) 275, 641
BspPI GGATC 2 cut(s) 231, 244
BspT104I TTCGAA 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 6 cut(s) 10, 236, 270, 382, 404, 970
BssNI GRCGYC 1 cut(s) 711
BssSI CACGAG 1 cut(s) 448
Bst2BI CACGAG 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 311, 428
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 5 cut(s) 621, 672, 933, 951, 999
BstF5I GGATG 4 cut(s) 68, 114, 331, 399
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 897
BstKTI GATC 6 cut(s) 13, 239, 273, 385, 407, 973
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 6 cut(s) 10, 236, 270, 382, 404, 970
BstMCI CGRYCG 1 cut(s) 724
BstMWI GCNNNNNNNGC 2 cut(s) 92, 200
BstNSI RCATGY 1 cut(s) 850
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 236, 270
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 2 cut(s) 236, 270
BstZI CGGCCG 1 cut(s) 721
BsuRI GGCC 3 cut(s) 723, 814, 1004
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 4 cut(s) 68, 114, 331, 399
BtsIMutI CAGTG 1 cut(s) 959
BveI ACCTGC 2 cut(s) 275, 641
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 1017
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 95, 897
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 749
Csp6I GTAC 2 cut(s) 424, 433
CviAII CATG 8 cut(s) 8, 14, 83, 466, 746, 770, 838, 847
CviQI GTAC 2 cut(s) 424, 433
DdeI CTNAG 5 cut(s) 621, 672, 933, 951, 999
DpnI GATC 6 cut(s) 12, 238, 272, 384, 406, 972
DpnII GATC 6 cut(s) 10, 236, 270, 382, 404, 970
EaeI YGGCCR 1 cut(s) 721
EagI CGGCCG 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
EclXI CGGCCG 1 cut(s) 721
Eco147I AGGCCT 2 cut(s) 814, 1004
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 749
Eco52I CGGCCG 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 2 cut(s) 198, 231
EcoRI GAATTC 3 cut(s) 128, 439, 690
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 8 cut(s) 11, 17, 86, 469, 749, 773, 841, 850
FatI CATG 8 cut(s) 7, 13, 82, 465, 745, 769, 837, 846
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 2 cut(s) 10, 382
Fnu4HI GCNGC 3 cut(s) 21, 334, 724
FokI GGATG 4 cut(s) 55, 101, 338, 406
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 21, 334, 724
GlaI GCGC 2 cut(s) 94, 896
GluI GCNGC 3 cut(s) 21, 334, 724
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 723, 814, 1004
HapII CCGG 2 cut(s) 330, 436
HhaI GCGC 2 cut(s) 95, 897
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 8 cut(s) 11, 17, 86, 469, 749, 773, 841, 850
Hin6I GCGC 2 cut(s) 93, 895
HinP1I GCGC 2 cut(s) 93, 895
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HinfI GANTC 5 cut(s) 122, 446, 854, 885, 919
HpaII CCGG 2 cut(s) 330, 436
HphI GGTGA 4 cut(s) 251, 314, 365, 935
Hpy166II GTNNAC 1 cut(s) 777
Hpy188I TCNGA 5 cut(s) 104, 127, 445, 890, 924
Hpy188III TCNNGA 7 cut(s) 14, 61, 179, 198, 231, 362, 490
Hpy8I GTNNAC 1 cut(s) 777
HpyAV CCTTC 4 cut(s) 185, 259, 587, 727
HpyCH4III ACNGT 2 cut(s) 311, 428
HpyCH4IV ACGT 2 cut(s) 57, 711
HpyCH4V TGCA 8 cut(s) 50, 256, 284, 469, 506, 636, 737, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 200
HpyF3I CTNAG 5 cut(s) 621, 672, 933, 951, 999
HpySE526I ACGT 2 cut(s) 57, 711
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 8 cut(s) 11, 17, 86, 469, 749, 773, 841, 850
HspAI GCGC 2 cut(s) 93, 895
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 2 cut(s) 10, 382
Kzo9I GATC 6 cut(s) 10, 236, 270, 382, 404, 970
LmnI GCTCC 2 cut(s) 4, 181
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 4 cut(s) 265, 271, 316, 746
MaeII ACGT 2 cut(s) 57, 711
MalI GATC 6 cut(s) 12, 238, 272, 384, 406, 972
MboI GATC 6 cut(s) 10, 236, 270, 382, 404, 970
MboII GAAGA 4 cut(s) 377, 409, 430, 843
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 2 cut(s) 236, 270
MhlI GDGCHC 2 cut(s) 68, 959
MluCI AATT 7 cut(s) 128, 134, 439, 471, 578, 637, 690
MlyI GAGTC 3 cut(s) 440, 863, 894
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 9 cut(s) 205, 227, 235, 238, 414, 474, 549, 708, 835
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 2 cut(s) 558, 1030
MslI CAYNNNNRTG 3 cut(s) 12, 297, 351
MspI CCGG 2 cut(s) 330, 436
MunI CAATTG 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 92, 200
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 6 cut(s) 10, 236, 270, 382, 404, 970
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 8 cut(s) 11, 17, 86, 469, 749, 773, 841, 850
NlaIV GGNNCC 1 cut(s) 238
NspI RCATGY 1 cut(s) 850
NspV TTCGAA 1 cut(s) 688
PaeR7I CTCGAG 2 cut(s) 198, 231
PagI TCATGA 1 cut(s) 13
PceI AGGCCT 2 cut(s) 814, 1004
PciI ACATGT 1 cut(s) 846
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 122, 919
PkrI GCNGC 3 cut(s) 22, 335, 725
PleI GAGTC 3 cut(s) 440, 862, 893
PpsI GAGTC 3 cut(s) 440, 862, 893
PscI ACATGT 1 cut(s) 846
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 749
PstNI CAGNNNCTG 1 cut(s) 1017
PsuI RGATCY 2 cut(s) 236, 270
RsaI GTAC 2 cut(s) 425, 434
RsaNI GTAC 2 cut(s) 424, 433
RseI CAYNNNNRTG 3 cut(s) 12, 297, 351
SaqAI TTAA 2 cut(s) 558, 1030
SatI GCNGC 3 cut(s) 21, 334, 724
Sau3AI GATC 6 cut(s) 10, 236, 270, 382, 404, 970
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 3 cut(s) 440, 863, 894
SduI GDGCHC 2 cut(s) 68, 959
SfaNI GCATC 4 cut(s) 265, 271, 316, 746
Sfr274I CTCGAG 2 cut(s) 198, 231
SfuI TTCGAA 1 cut(s) 688
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 2 cut(s) 198, 231
SmiMI CAYNNNNRTG 3 cut(s) 12, 297, 351
SmlI CTYRAG 4 cut(s) 198, 231, 490, 898
SmoI CTYRAG 4 cut(s) 198, 231, 490, 898
Sse9I AATT 7 cut(s) 128, 134, 439, 471, 578, 637, 690
SseBI AGGCCT 2 cut(s) 814, 1004
SsiI CCGC 3 cut(s) 147, 333, 724
StuI AGGCCT 2 cut(s) 814, 1004
TaaI ACNGT 2 cut(s) 311, 428
TaiI ACGT 2 cut(s) 60, 714
TaqI TCGA 5 cut(s) 199, 232, 688, 883, 994
TasI AATT 7 cut(s) 128, 134, 439, 471, 578, 637, 690
TauI GCSGC 2 cut(s) 336, 726
TfiI GAWTC 2 cut(s) 122, 919
Tru1I TTAA 2 cut(s) 558, 1030
Tru9I TTAA 2 cut(s) 558, 1030
TscAI CASTG 1 cut(s) 959
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 6 cut(s) 24, 30, 335, 390, 410, 454
TspRI CASTG 1 cut(s) 959
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 3 cut(s) 128, 439, 690
XceI RCATGY 1 cut(s) 850
XhoI CTCGAG 2 cut(s) 198, 231
ZraI GACGTC 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.