Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Forward (+)

4474106 .. 4475949

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATGGAGATGAGATGACTCGAATTTTCTGGAAATCAATTAAGGATAAGCTTATTTTCCCCTTTTTGGATTGGGATATTAAGTACTTTGACCTTGGTCTTACCCACCGTGATGCCACGATGATAAAGTTACCGTTGAAAAGAACTGATTCTTTGCAAGAACATTCCTTACCTCATTGGACGAAGCCAATATGCATTGGAAAACATGCTTTCGGTGATCAATATCGAGCAACTGATACAGTTATCAAAGGACCTGGAAAATTGAAATTGTTGTTTGTTCCAGAAGGAAAGGACGAGATGACCGAACTGGAATTACACAACTTTACAGGGGAAGGGGGAGTAGCAATTGCCATGCACAACACCGATGAGTCAATCTGTGCTTTTGTAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGGTGGCCTCTTATAATAGCACAAAAAACACTCTTCTTAATAAGTATGATGGAAGGTTCAAGGACATATTTCAAGAAGTTTATGATGCCCTTTGGAAATCGAAGTATGAAGCTGCTGGCATATGGTATGAACATCACCTCATTGATGATATGGTGGCTTATGCATTCAAAAGTGAAGGTGGTTATGTTTGGGCATCCAAGAATTATGATGGCGATGTGCAAAGTGATTTCTTAGCTCAAGAAGCTGAACCTGTCCATGGTGCAGTTACTCGGCATTATAGAGTTCACCAGAAAAGTGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGTTTGGACAAGAGAGCTTGAGCACAAGGCAAAGTTGGATGACAATTTCACTCAGACGCTGGAAGAAGCTTGTATTGAAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCACTAGTTCTTAACGGACCTAACCTTGCTAGGAACCACTACTTGAACACGGAAGAGTTCATTGATGTCGTGGCAGCAGAATTGAATGCAAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

320

Amino Acids

36.46

Weight (kDa)

5.39

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	58 - 219	6.5e-22	Isocitrate/isopropylmalate dehydrogenase
Iso_dh	PF00180	220 - 311	2.4e-12	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AclWI	GGATC	1 cut(s)	864
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	67, 674
AgsI	TTSAA	8 cut(s)	139, 265, 478, 491, 586, 827, 907, 946
AhlI	ACTAGT	1 cut(s)	865
AjnI	CCWGG	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	1 cut(s)	864
AlwNI	CAGNNNCTG	1 cut(s)	808
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	530, 935
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	251, 878
AsuHPI	GGTGA	4 cut(s)	227, 545, 695, 728
AvaII	GGWCC	2 cut(s)	251, 878
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	517, 947
BccI	CCATC	2 cut(s)	461, 620
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	217
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	2 cut(s)	866, 891
BisI	GCNGC	2 cut(s)	531, 936
BlsI	GCNGC	2 cut(s)	532, 937
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	251, 878
BmgT120I	GGNCC	2 cut(s)	251, 878
BmiI	GGNNCC	1 cut(s)	896
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	103, 493, 620
BoxI	GACNNNNGTC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	639, 788
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	94, 673, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 674
Bse1I	ACTGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	94, 673, 852
BseGI	GGATG	3 cut(s)	10, 611, 793
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	67, 674
BseMII	CTCAG	1 cut(s)	815
BseNI	ACTGG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	517, 947
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	774
BslI	CCNNNNNNNGG	2 cut(s)	67, 674
BsmI	GAATGC	2 cut(s)	581, 952
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	217, 856
Bsp19I	CCATGG	1 cut(s)	673
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	896
BspPI	GGATC	1 cut(s)	864
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	94, 673, 852
BssMI	GATC	2 cut(s)	217, 856
BssT1I	CCWWGG	3 cut(s)	94, 673, 852
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	110, 135, 241, 832
Bst6I	CTCTTC	2 cut(s)	456, 909
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	2 cut(s)	649, 801
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	3 cut(s)	10, 611, 793
BstKTI	GATC	2 cut(s)	220, 859
BstMBI	GATC	2 cut(s)	217, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 732
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	517, 947
BstX2I	RGATCY	1 cut(s)	856
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	3 cut(s)	10, 611, 793
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	1 cut(s)	808
Cfr13I	GGNCC	2 cut(s)	251, 878
CseI	GACGC	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	206, 352, 674
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	649, 801
DpnI	GATC	2 cut(s)	219, 858
DpnII	GATC	2 cut(s)	217, 856
Eam1104I	CTCTTC	2 cut(s)	456, 909
EarI	CTCTTC	2 cut(s)	456, 909
Eco130I	CCWWGG	3 cut(s)	94, 673, 852
Eco47I	GGWCC	2 cut(s)	251, 878
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	3 cut(s)	94, 673, 852
EcoT22I	ATGCAT	2 cut(s)	197, 583
ErhI	CCWWGG	3 cut(s)	94, 673, 852
FaeI	CATG	3 cut(s)	209, 355, 677
FatI	CATG	3 cut(s)	205, 351, 673
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	531, 936
FokI	GGATG	3 cut(s)	17, 598, 800
Fsp4HI	GCNGC	2 cut(s)	531, 936
FspBI	CTAG	2 cut(s)	866, 891
GluI	GCNGC	2 cut(s)	531, 936
HaeIII	GGCC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	814
Hin1II	CATG	3 cut(s)	209, 355, 677
HindIII	AAGCTT	4 cut(s)	50, 390, 816, 953
HinfI	GANTC	4 cut(s)	19, 149, 368, 836
HphI	GGTGA	4 cut(s)	227, 545, 695, 728
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	1 cut(s)	804
Hpy188III	TCNNGA	5 cut(s)	31, 281, 491, 656, 960
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	4 cut(s)	278, 326, 465, 587
HpyCH4III	ACNGT	4 cut(s)	110, 135, 241, 832
HpyCH4V	TGCA	8 cut(s)	157, 195, 355, 581, 637, 680, 863, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 732
HpyF3I	CTNAG	2 cut(s)	649, 801
Hsp92II	CATG	3 cut(s)	209, 355, 677
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 856
Lsp1109I	GCAGC	2 cut(s)	517, 947
LweI	GCATC	3 cut(s)	103, 493, 620
MaeI	CTAG	2 cut(s)	866, 891
MaeIII	GTNAC	2 cut(s)	129, 682
MalI	GATC	2 cut(s)	219, 858
MboI	GATC	2 cut(s)	217, 856
MboII	GAAGA	3 cut(s)	443, 824, 926
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	9 cut(s)	24, 39, 260, 266, 311, 345, 619, 793, 941
MlyI	GAGTC	2 cut(s)	13, 377
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	3 cut(s)	183, 436, 566
Mph1103I	ATGCAT	2 cut(s)	197, 583
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	4 cut(s)	42, 81, 456, 873
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	2 cut(s)	581, 952
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	659, 732
NcoI	CCATGG	1 cut(s)	673
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	2 cut(s)	217, 856
NlaIII	CATG	3 cut(s)	209, 355, 677
NlaIV	GGNNCC	1 cut(s)	896
NmeAIII	GCCGAG	1 cut(s)	667
NsiI	ATGCAT	2 cut(s)	197, 583
NspI	RCATGY	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	2 cut(s)	581, 952
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	149, 836
PkrI	GCNGC	2 cut(s)	532, 937
PleI	GAGTC	2 cut(s)	13, 376
PpsI	GAGTC	2 cut(s)	13, 376
PpuMI	RGGWCCY	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	896
PspPI	GGNCC	2 cut(s)	251, 878
PspPPI	RGGWCCY	1 cut(s)	251
PsrI	GAACNNNNNNTAC	4 cut(s)	153, 185, 297, 329
PstNI	CAGNNNCTG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	42, 81, 456, 873
SatI	GCNGC	2 cut(s)	531, 936
Sau3AI	GATC	2 cut(s)	217, 856
Sau96I	GGNCC	2 cut(s)	251, 878
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	13, 377
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	3 cut(s)	103, 493, 620
SinI	GGWCC	2 cut(s)	251, 878
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	654, 767
SmoI	CTYRAG	2 cut(s)	654, 767
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	9 cut(s)	24, 39, 260, 266, 311, 345, 619, 793, 941
SspMI	CTAG	2 cut(s)	866, 891
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	3 cut(s)	94, 673, 852
TaaI	ACNGT	4 cut(s)	110, 135, 241, 832
TaqI	TCGA	3 cut(s)	22, 226, 518
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	9 cut(s)	24, 39, 260, 266, 311, 345, 619, 793, 941
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	149, 836
Tru1I	TTAA	4 cut(s)	42, 81, 456, 873
Tru9I	TTAA	4 cut(s)	42, 81, 456, 873
TseI	GCWGC	2 cut(s)	530, 935
TspDTI	ATGAA	4 cut(s)	413, 540, 561, 910
TspGWI	ACGGA	2 cut(s)	891, 926
VpaK11BI	GGWCC	2 cut(s)	251, 878
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	2 cut(s)	866, 891
ZrmI	AGTACT	1 cut(s)	86
Zsp2I	ATGCAT	2 cut(s)	197, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.