RchiOBHm_Chr1g0336861

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017507
Physical Location & Seq
Reverse (-)
28513677 .. 28515714
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCGAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTTGGGGGATCGGATGCTGTTGGGGAGGAATGTCCTGTTGCAAAGAGGAGGAAAGTGGCTGCTGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGGTAAGATGATGAATGACGCTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGCAGAGGAAGGGGGAGGAAAGCGGTTGCCGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGCTGCATGATGCTGGTAACACCATTGGAAGTGGCCGGGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGGAGGGAAGGAGATAAGTGCACCCAATGAGAAATATGAAGATGATTTGGACATTGATAAGCATGAGGACAAGCTCGATGAACCCCTTGAGTTGCTGGATGATGCAACAGAGCCTAAAGGGTCAAAGGAAAACGCTTCAGGTGGCAATAGTGCAGAAACAGCTGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTAGATCAGCCTCTGTTCCTGTTCCTGGTCCTGGTCCTGTTGCAGCTCCTGCTCCTGTTCCTGTTTCTGTACCTGTTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTTCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGAGGAAGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

349

Amino Acids

38.02

Weight (kDa)

4.99

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 32, 449
AclWI GGATC 2 cut(s) 283, 977
AcoI YGGCCR 2 cut(s) 535, 975
AcsI RAATTY 3 cut(s) 187, 763, 938
AcuI CTGAAG 2 cut(s) 205, 714
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 879
AfiI CCNNNNNNNGG 6 cut(s) 168, 169, 269, 833, 839, 959
AgsI TTSAA 5 cut(s) 202, 241, 775, 787, 804
AjnI CCWGG 3 cut(s) 99, 832, 838
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 13, 83, 667, 755, 854
AluI AGCT 5 cut(s) 13, 83, 667, 755, 854
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 2 cut(s) 283, 977
AlwNI CAGNNNCTG 2 cut(s) 821, 857
AoxI GGCC 4 cut(s) 535, 563, 950, 975
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 4 cut(s) 326, 505, 755, 851
ApoI RAATTY 3 cut(s) 187, 763, 938
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 836, 842
AsuC2I CCSGG 1 cut(s) 539
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 2 cut(s) 836, 842
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 977
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 345, 471
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 4 cut(s) 313, 492, 742, 863
BccI CCATC 1 cut(s) 967
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 3 cut(s) 101, 834, 840
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 567, 810, 944, 1008
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 327, 506, 756, 852
BlsI GCNGC 5 cut(s) 34, 328, 507, 757, 853
Bme1390I CCNGG 4 cut(s) 101, 539, 834, 840
Bme18I GGWCC 2 cut(s) 836, 842
BmgT120I GGNCC 2 cut(s) 836, 842
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 4 cut(s) 101, 539, 834, 840
BmsI GCATC 4 cut(s) 271, 492, 502, 685
BpiI GAAGAC 2 cut(s) 345, 471
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 149, 701
BpuMI CCSGG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 30, 114, 538
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 169, 269, 833, 839, 959
BseBI CCWGG 3 cut(s) 101, 834, 840
BseDI CCNNGG 3 cut(s) 30, 114, 538
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 6 cut(s) 168, 169, 269, 833, 839, 959
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 4 cut(s) 313, 492, 742, 863
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 537, 565, 952, 977
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 2 cut(s) 145, 538
BslI CCNNNNNNNGG 6 cut(s) 168, 169, 269, 833, 839, 959
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 4 cut(s) 537, 565, 952, 977
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 4 cut(s) 265, 275, 812, 982
BspACI CCGC 3 cut(s) 30, 32, 449
BspANI GGCC 4 cut(s) 537, 565, 952, 977
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 283, 977
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 30, 114, 538
BssMI GATC 4 cut(s) 265, 275, 812, 982
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 3 cut(s) 101, 834, 840
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 912
Bst6I CTCTTC 2 cut(s) 538, 1020
BstAPI GCANNNNNTGC 1 cut(s) 857
BstBAI YACGTR 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 268, 278, 815, 985
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 265, 275, 812, 982
BstMWI GCNNNNNNNGC 2 cut(s) 752, 857
BstNI CCWGG 3 cut(s) 101, 834, 840
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 4 cut(s) 99, 537, 832, 838
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 313, 492, 742, 863
BstV2I GAAGAC 2 cut(s) 345, 471
BsuRI GGCC 4 cut(s) 537, 565, 952, 977
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 2 cut(s) 821, 857
Cfr13I GGNCC 2 cut(s) 836, 842
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 878
CviAII CATG 6 cut(s) 184, 509, 656, 932, 964, 988
CviQI GTAC 1 cut(s) 878
DpnI GATC 4 cut(s) 267, 277, 814, 984
DpnII GATC 4 cut(s) 265, 275, 812, 982
EaeI YGGCCR 2 cut(s) 535, 975
Eam1104I CTCTTC 2 cut(s) 538, 1020
EarI CTCTTC 2 cut(s) 538, 1020
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 836, 842
Eco57I CTGAAG 2 cut(s) 205, 714
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 99, 832, 838
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 187, 512, 659, 935, 967, 991
FatI CATG 6 cut(s) 183, 508, 655, 931, 963, 987
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 327, 506, 756, 852
FokI GGATG 3 cut(s) 80, 293, 704
Fsp4HI GCNGC 5 cut(s) 33, 327, 506, 756, 852
FspBI CTAG 4 cut(s) 567, 810, 944, 1008
GluI GCNGC 5 cut(s) 33, 327, 506, 756, 852
HaeIII GGCC 4 cut(s) 537, 565, 952, 977
HapII CCGG 2 cut(s) 145, 538
HgaI GACGC 1 cut(s) 395
Hin1II CATG 6 cut(s) 187, 512, 659, 935, 967, 991
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 2 cut(s) 145, 538
Hpy166II GTNNAC 3 cut(s) 614, 781, 915
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 762
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 3 cut(s) 614, 781, 915
HpyAV CCTTC 6 cut(s) 229, 235, 411, 429, 543, 595
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 912
HpyCH4IV ACGT 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 857
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 6 cut(s) 187, 512, 659, 935, 967, 991
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 4 cut(s) 265, 275, 812, 982
LmnI GCTCC 3 cut(s) 173, 859, 865
Lsp1109I GCAGC 4 cut(s) 313, 492, 742, 863
LweI GCATC 4 cut(s) 271, 492, 502, 685
MaeI CTAG 4 cut(s) 567, 810, 944, 1008
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 140, 518
MalI GATC 4 cut(s) 267, 277, 814, 984
MboI GATC 4 cut(s) 265, 275, 812, 982
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1037, 1043
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 5 cut(s) 39, 187, 763, 938, 1000
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 977
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 977
MseI TTAA 2 cut(s) 42, 1048
Msp20I TGGCCA 1 cut(s) 977
MspA1I CMGCKG 2 cut(s) 32, 755
MspI CCGG 2 cut(s) 145, 538
MspR9I CCNGG 4 cut(s) 101, 539, 834, 840
MvaI CCWGG 3 cut(s) 101, 834, 840
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 752, 857
NciI CCSGG 1 cut(s) 539
NdeII GATC 4 cut(s) 265, 275, 812, 982
NlaIII CATG 6 cut(s) 187, 512, 659, 935, 967, 991
NlaIV GGNNCC 2 cut(s) 175, 261
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 935
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 507, 757, 853
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 3 cut(s) 99, 832, 838
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 3 cut(s) 99, 832, 838
PspN4I GGNNCC 2 cut(s) 175, 261
PspPI GGNCC 2 cut(s) 836, 842
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 821, 857
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 879
RsaNI GTAC 1 cut(s) 878
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 42, 1048
SatI GCNGC 5 cut(s) 33, 327, 506, 756, 852
Sau3AI GATC 4 cut(s) 265, 275, 812, 982
Sau96I GGNCC 2 cut(s) 836, 842
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 4 cut(s) 101, 539, 834, 840
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 4 cut(s) 271, 492, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 2 cut(s) 836, 842
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 938, 1000
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 30, 32, 449
SspMI CTAG 4 cut(s) 567, 810, 944, 1008
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 4 cut(s) 99, 537, 832, 838
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 123, 207, 400, 912
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 37, 107, 669
TasI AATT 5 cut(s) 39, 187, 763, 938, 1000
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 42, 1048
Tru9I TTAA 2 cut(s) 42, 1048
TscAI CASTG 3 cut(s) 212, 229, 475
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 4 cut(s) 326, 505, 755, 851
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 8 cut(s) 200, 351, 395, 477, 645, 687, 804, 941
TspRI CASTG 3 cut(s) 212, 229, 475
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 2 cut(s) 836, 842
XagI CCTNNNNNAGG 1 cut(s) 957
XapI RAATTY 3 cut(s) 187, 763, 938
XceI RCATGY 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 567, 810, 944, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.