Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014195

Physical Location & Seq

Genomic Coordinates Reverse (-)

47912710 .. 47913250

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATAACTACTCATCACCTTCAGAAGGTTTAGAAGATCATGATGAGGTTGAAGGACTTGGAATGCACACCGACATGAGCTGTGTGACAATTGTGTACCAAGATGAAATTGGTGGACTTCAAGTGAGATCAAAAGAGGGTAAGTGGATGGACATAAGCCCATGTGAGGGAACCTTGGTGGTGAACGTAGGTGACATGTTTCAAGCTTGGAGCAATGAGAAGTTGAGATCATCAGAACATAGAGTGATTCTCAAGCAGCCTGTAAACCGTTTTTCGCTAGCCTTCTTCTGGTGTTTTGAAGATCAGAAGGTGATTTCTGCACCAGATGATGTGGTGGGAGAAGGGAATGTGAGGATTTACGAGCCATTTGTTTGCTCGGATTATTTGAAATTCAGAGAGAGCAATGAGAGAGGGAGGTTTGAGAAGGTTGGGTTTACAGTGAGGGGTTTTGCAGGGATTAAAGACCAGCAAGTTATAAAATGTGACAGTGGAAAAGGAATTGGAAGTGTGGCTTGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

4.92

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	2 - 98	1.1e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23340 AT4G23340
fragaria_vesca	FvH4_7g14240
malus_domestica	MD01G1060300.v1.1 MD07G1137400.v1.1
prunus_persica	Prupe.2G170200_v2.0.a1
pyrus_communis	pycom01g09040
rosa_chinensis	RchiOBHm_Chr1g0355221
rosa_laevigata	RLG00000028170
rosa_multiflora	Rmu_sc0003115.1_g000042
rosa_roxburghii	Rroxscaffold_4G00300580
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258100 Rh1BG227700 Rh1CG241800 Rh1DG255500
rosa_wichuraiana	Rw1G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	4 cut(s)	26, 166, 167, 288
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	53, 122, 203, 299, 388
AluBI	AGCT	2 cut(s)	81, 206
AluI	AGCT	2 cut(s)	81, 206
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	389
AsuHPI	GGTGA	4 cut(s)	9, 193, 203, 322
AsuNHI	GCTAGC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	172
BmtI	GCTAGC	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 166, 167, 288
Bse3DI	GCAATG	2 cut(s)	220, 409
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	4 cut(s)	26, 166, 167, 288
BseMI	GCAATG	2 cut(s)	220, 409
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	26, 166, 167, 288
BsmI	GAATGC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	37, 128, 227, 301
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	220, 409
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	4 cut(s)	37, 128, 227, 301
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	269, 439, 488
BstC8I	GCNNGC	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	40, 131, 230, 304
BstMBI	GATC	4 cut(s)	37, 128, 227, 301
BstNSI	RCATGY	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	444, 493
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	41, 76, 162, 196
CviJI	RGCY	7 cut(s)	81, 159, 206, 259, 281, 364, 512
CviKI_1	RGCY	7 cut(s)	81, 159, 206, 259, 281, 364, 512
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	4 cut(s)	39, 130, 229, 303
DpnII	GATC	4 cut(s)	37, 128, 227, 301
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	44, 79, 165, 199
FaiI	YATR	7 cut(s)	42, 77, 155, 163, 197, 240, 476
FalI	AAGNNNNNCTT	1 cut(s)	496
FatI	CATG	4 cut(s)	40, 75, 161, 195
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	44, 79, 165, 199
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	247
HphI	GGTGA	4 cut(s)	9, 193, 203, 322
Hpy166II	GTNNAC	5 cut(s)	97, 116, 184, 265, 435
Hpy188I	TCNGA	5 cut(s)	25, 235, 306, 379, 395
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	5 cut(s)	97, 116, 184, 265, 435
HpyAV	CCTTC	7 cut(s)	20, 30, 47, 292, 301, 335, 418
HpyCH4III	ACNGT	3 cut(s)	269, 439, 488
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	67, 320, 452
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	44, 79, 165, 199
Kzo9I	GATC	4 cut(s)	37, 128, 227, 301
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	5 cut(s)	273, 274, 336, 438, 479
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	85, 191, 482
MalI	GATC	4 cut(s)	39, 130, 229, 303
MboI	GATC	4 cut(s)	37, 128, 227, 301
MboII	GAAGA	3 cut(s)	47, 277, 311
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	5 cut(s)	90, 108, 389, 498, 517
MnlI	CCTC	7 cut(s)	40, 130, 160, 345, 404, 408, 435
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	69
NdeII	GATC	4 cut(s)	37, 128, 227, 301
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	44, 79, 165, 199
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	3 cut(s)	85, 191, 482
NspI	RCATGY	1 cut(s)	199
PagI	TCATGA	1 cut(s)	40
PciI	ACATGT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	258
PscI	ACATGT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	4 cut(s)	37, 128, 227, 301
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	90, 108, 389, 498, 517
SspMI	CTAG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	269, 439, 488
TaiI	ACGT	1 cut(s)	189
TasI	AATT	5 cut(s)	90, 108, 389, 498, 517
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	444, 493
TseFI	GTSAC	3 cut(s)	85, 191, 482
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	3 cut(s)	85, 191, 482
TspDTI	ATGAA	2 cut(s)	17, 120
TspRI	CASTG	2 cut(s)	444, 493
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.