RchiOBHm_Chr1g0357831

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015360
Physical Location & Seq
Forward (+)
50078064 .. 50079155
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGCAGCAGCTGGGAGCACCCTACAACTTTCTCAATCTCACCCCCAAAAAAATCCCAATGGCTAAAACCCCTTCATCCCTCCACCACCACCTCCTCCTCCTCCTCCAATGTCCCCCCTCCCTCCTCCCCTCCTCAAATTACCTCACTACCCTCGGCCTCGGCTACGCCATAGCCATCGCCCTTGGCTTTCTCGTCCTTCTCTCCACCCTCCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCACCATCGCTCCCAGCCCCAAACCCAAACCCAAAACCCCAACTCCTCCTCCGAGGGCGTCATCCTCCCCCGCATCATCTTCGTCGCCGAGGACGACGTCGAGAACCAAGAAAACGACGATGAGAACTCCGTCGTCGGCCTCCACCAGAACGTCATCAACTCCTACCCCAAGTTCCCCTTCTCCAAGGAAATCGGCGGAGGCGATGCCTCCACGTGCTCCATCTGCCTCTGCGACTACCACGAATTCGAGATGCTGAGGATGATGCCCGAGTGCCGCCACCACTTCCACCTATTGTGTCTCGACGCGTGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGCCGGAACTCGCCGCTGCCGACTCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGAGCCAGCACGCCGCCGATCGGAGATGGAGGAGCTTTGTTGGGTTTGGAGTGGGTTGTATAAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29 zf-RING_2

Protein Analysis

236

Amino Acids

26.25

Weight (kDa)

6.58

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 153 - 196 7.2e-12 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46160 AT2G46160
fragaria_vesca FvH4_7g15500
malus_domestica MD01G1072300.v1.1
prunus_persica Prupe.2G178600_v2.0.a1
pyrus_communis pycom01g10150 pycom07g12760
rosa_chinensis RchiOBHm_Chr1g0357831
rosa_laevigata RLG00000027993
rosa_multiflora Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana Rw1G024350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
AatII GACGTC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 1 cut(s) 614
AccII CGCG 2 cut(s) 237, 551
AcsI RAATTY 2 cut(s) 488, 703
AcvI CACGTG 1 cut(s) 459
AcyI GRCGYC 3 cut(s) 303, 342, 617
AfiI CCNNNNNNNGG 2 cut(s) 585, 660
AflIII ACRYGT 1 cut(s) 549
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 3 cut(s) 10, 562, 675
AluI AGCT 3 cut(s) 10, 562, 675
Alw21I GWGCWC 2 cut(s) 19, 464
Alw26I GTCTC 2 cut(s) 244, 548
AlwNI CAGNNNCTG 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 2 cut(s) 154, 382
ApeKI GCWGC 5 cut(s) 4, 7, 231, 598, 622
ApoI RAATTY 2 cut(s) 488, 703
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 512
BanI GGYRCC 1 cut(s) 634
BbrPI CACGTG 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 19, 464
BbvCI CCTCAGC 1 cut(s) 500
BbvI GCAGC 5 cut(s) 16, 19, 218, 585, 609
BccI CCATC 4 cut(s) 182, 258, 473, 660
BceAI ACGGC 1 cut(s) 583
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 604, 638
BcoDI GTCTC 2 cut(s) 244, 548
BfmI CTRYAG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 641
BmeT110I CYCGRG 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 571, 636
BmsI GCATC 4 cut(s) 327, 439, 486, 498
Bpu10I CCTNAGC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 459
BsaHI GRCGYC 3 cut(s) 303, 342, 617
BsaJI CCNNGG 6 cut(s) 151, 157, 181, 297, 333, 429
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 272, 278, 302, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 660
BseDI CCNNGG 6 cut(s) 151, 157, 181, 297, 333, 429
BseGI GGATG 3 cut(s) 74, 306, 510
BseLI CCNNNNNNNGG 2 cut(s) 585, 660
BseMII CTCAG 2 cut(s) 491, 632
BseXI GCAGC 5 cut(s) 16, 19, 218, 585, 609
BseYI CCCAGC 2 cut(s) 10, 258
Bsh1236I CGCG 2 cut(s) 237, 551
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 156, 384
BshNI GGYRCC 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 661
BsiHKAI GWGCWC 2 cut(s) 19, 464
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 586
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 585, 660
BsmAI GTCTC 2 cut(s) 244, 548
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 156, 384
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 19, 464
Bsp143I GATC 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 641
BspANI GGCC 2 cut(s) 156, 384
BspCNI CTCAG 2 cut(s) 492, 633
BspFNI CGCG 2 cut(s) 237, 551
BspLI GGNNCC 2 cut(s) 571, 636
BspMAI CTGCAG 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 634
BssECI CCNNGG 6 cut(s) 151, 157, 181, 297, 333, 429
BssMI GATC 1 cut(s) 658
BssNI GRCGYC 3 cut(s) 303, 342, 617
BssT1I CCWWGG 2 cut(s) 181, 429
BstACI GRCGYC 3 cut(s) 303, 342, 617
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 647, 651
BstDEI CTNAG 2 cut(s) 500, 641
BstF5I GGATG 3 cut(s) 74, 306, 510
BstFNI CGCG 2 cut(s) 237, 551
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 2 cut(s) 244, 548
BstMBI GATC 1 cut(s) 658
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 7 cut(s) 243, 252, 468, 582, 607, 616, 646
BstSFI CTRYAG 1 cut(s) 623
BstUI CGCG 2 cut(s) 237, 551
BstV1I GCAGC 5 cut(s) 16, 19, 218, 585, 609
BsuRI GGCC 2 cut(s) 156, 384
BtgZI GCGATG 3 cut(s) 160, 236, 462
BtsCI GGATG 3 cut(s) 74, 306, 510
Cac8I GCNNGC 2 cut(s) 647, 651
CaiI CAGNNNCTG 1 cut(s) 10
CseI GACGC 4 cut(s) 226, 292, 557, 625
DdeI CTNAG 2 cut(s) 500, 641
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
EciI GGCGGA 1 cut(s) 456
Eco130I CCWWGG 2 cut(s) 181, 429
Eco72I CACGTG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 488
EcoT14I CCWWGG 2 cut(s) 181, 429
ErhI CCWWGG 2 cut(s) 181, 429
Esp3I CGTCTC 1 cut(s) 244
FaiI YATR 2 cut(s) 170, 701
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 96
FauI CCCGC 2 cut(s) 251, 323
FblI GTMKAC 1 cut(s) 614
FokI GGATG 3 cut(s) 61, 293, 517
GsaI CCCAGC 2 cut(s) 14, 262
HaeIII GGCC 2 cut(s) 156, 384
HapII CCGG 1 cut(s) 586
HgaI GACGC 4 cut(s) 226, 292, 557, 625
Hin1I GRCGYC 3 cut(s) 303, 342, 617
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 1 cut(s) 604
HpaII CCGG 1 cut(s) 586
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 2 cut(s) 298, 663
Hpy188III TCNNGA 3 cut(s) 346, 493, 545
Hpy8I GTNNAC 1 cut(s) 615
Hpy99I CGWCG 8 cut(s) 332, 344, 347, 365, 380, 383, 551, 619
HpyAV CCTTC 3 cut(s) 81, 206, 433
HpyCH4IV ACGT 3 cut(s) 342, 396, 458
HpyCH4V TGCA 2 cut(s) 4, 625
HpyF10VI GCNNNNNNNGC 7 cut(s) 243, 252, 468, 582, 607, 616, 646
HpyF3I CTNAG 2 cut(s) 500, 641
HpySE526I ACGT 3 cut(s) 342, 396, 458
Hsp92I GRCGYC 3 cut(s) 303, 342, 617
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 5 cut(s) 14, 260, 467, 575, 672
LpnPI CCDG 6 cut(s) 272, 404, 586, 599, 611, 659
Lsp1109I GCAGC 5 cut(s) 16, 19, 218, 585, 609
LweI GCATC 4 cut(s) 327, 439, 486, 498
MaeII ACGT 3 cut(s) 342, 396, 458
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 19, 464
MluCI AATT 3 cut(s) 136, 488, 703
MluI ACGCGT 1 cut(s) 549
MlyI GAGTC 1 cut(s) 598
MspA1I CMGCKG 5 cut(s) 10, 598, 610, 622, 640
MspI CCGG 1 cut(s) 586
MvnI CGCG 2 cut(s) 237, 551
MwoI GCNNNNNNNGC 7 cut(s) 243, 252, 468, 582, 607, 616, 646
NdeII GATC 1 cut(s) 658
NlaIV GGNNCC 2 cut(s) 571, 636
NmeAIII GCCGAG 3 cut(s) 132, 138, 358
PcsI WCGNNNNNNNCGW 3 cut(s) 336, 444, 599
PflFI GACNNNGTC 1 cut(s) 341
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 1 cut(s) 598
PmaCI CACGTG 1 cut(s) 459
PmlI CACGTG 1 cut(s) 459
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 459
PspCI CACGTG 1 cut(s) 459
PspFI CCCAGC 2 cut(s) 10, 258
PspN4I GGNNCC 2 cut(s) 571, 636
PstI CTGCAG 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 341
PvuI CGATCG 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 10
SalI GTCGAC 1 cut(s) 613
Sau3AI GATC 1 cut(s) 658
SchI GAGTC 1 cut(s) 598
SduI GDGCHC 2 cut(s) 19, 464
SfaNI GCATC 4 cut(s) 327, 439, 486, 498
SfcI CTRYAG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 3 cut(s) 136, 488, 703
StyI CCWWGG 2 cut(s) 181, 429
TaiI ACGT 3 cut(s) 345, 399, 461
TaqI TCGA 4 cut(s) 345, 492, 546, 614
TasI AATT 3 cut(s) 136, 488, 703
TauI GCSGC 6 cut(s) 237, 522, 598, 622, 640, 656
TseI GCWGC 5 cut(s) 4, 7, 231, 598, 622
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 341
XapI RAATTY 2 cut(s) 488, 703
XmiI GTMKAC 1 cut(s) 614
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.