RchiOBHm_Chr1g0359371

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014124
Physical Location & Seq
Reverse (-)
51352750 .. 51355819
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
ATGCCGAAGCGAAAGCAGCGAACCGGAGCCGTTCAGCCTCTGAAGACGCAGAAGCGTATGCGAAGAGCCAAGCCGATTTGCTCTTGCACCTCTCCTCGTTTCACTTCTTCTGGCCCCGCATTCACCTGTCACGAGCAGGACGTTTGGACGGAGATCGCAAAGTTTCTGGACGGAAAGTCACTGGTGATGCTCGCTGCGACATGTCGTTGGTTCCACGCGCTGGTCGAGGACGGGAGCATATGGAGGTACTTGTGCTTGCGTGATCTTCAGGTCCCTGCTCCTCGCCACCCGGCGGCGTTTGATTGGAAGAAGCTCTACATTTCCGCTTTCAATGGGAGTCACTCTTACATGTTCCGCCATCCGGAGAAGCATATCGACTGGATGCGTATCGGTGCATTTTTCCTGGAATCTTCTTCAGTACTCCTAACAGAGAGGCTGAGCACCCCACTGAAATTCCCCAAGGAAGATAGCATTCAGAAAATGTTGGAGTCGAGCGGCAGTTGTGTGTTGAACAATGTGAAACCTGGGATATGGATTGCAGATCTCCAGCTTGTTCGATGCCCTGTCTGCGAGCTCAATACTTGTGATGGAACAATGCAAACATTGGATGCAAGGCATATTGAACTGTTCTTGAGTGAGGGATACCAGGATGGTAGCTGGGAATATGAACTTATTGGAATTCAGGATGTCAAAAAGCATGTTGAGGGTGCTTCTGGAGCTATTTTCGATGTCAAACACCTCAAGGACTCTTCCACTTCAGCAGTCTTCAACCTCAAGTCATGGGTCGGGAAACCGAATGACTGGCAACCGAAGGCTGTGATCACAATGCATGCAGTTGCTGTCAACACAAATCTGCAGAGAAATGAAGGCCTGCAAGTCAAATACCATGTGATGACAGCTGGAGCTGGAGGAGAAGTTGTATCTATTCGAATCTCGCAGCAGCTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

35.68

Weight (kDa)

9.0

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 47 - 87 1.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61730 AT5G36000
fragaria_vesca FvH4_7g16360 FvH4_7g16360
malus_domestica MD01G1080100.v1.1 MD07G1149100.v1.1
prunus_persica Prupe.2G187500_v2.0.a1
pyrus_communis pycom01g10840
rosa_chinensis RchiOBHm_Chr1g0359371
rosa_laevigata RLG00000027875
rosa_multiflora Rmu_co8499881.1_g000001
rosa_rugosa Rorug01G0270600
rosa_samantha Rh1AG284100 Rh1BG250200 Rh1CG268100 Rh1DG279100
rosa_wichuraiana Rw1G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 495
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 5 cut(s) 117, 293, 324, 355, 495
AcsI RAATTY 2 cut(s) 452, 678
AcuI CTGAAG 4 cut(s) 62, 251, 399, 741
AfaI GTAC 2 cut(s) 248, 420
AfiI CCNNNNNNNGG 3 cut(s) 220, 292, 361
AflIII ACRYGT 2 cut(s) 200, 348
AgsI TTSAA 4 cut(s) 331, 511, 623, 769
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 3 cut(s) 402, 523, 645
AluBI AGCT 8 cut(s) 313, 550, 574, 657, 719, 899, 905, 943
AluI AGCT 8 cut(s) 313, 550, 574, 657, 719, 899, 905, 943
Alw21I GWGCWC 2 cut(s) 443, 576
AlwNI CAGNNNCTG 3 cut(s) 40, 839, 946
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 2 cut(s) 112, 868
ApeKI GCWGC 4 cut(s) 16, 194, 937, 940
ApoI RAATTY 2 cut(s) 452, 678
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 113, 271
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 115, 196
AsuII TTCGAA 1 cut(s) 928
AvaII GGWCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 576
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 2 cut(s) 50, 757
Bbv12I GWGCWC 2 cut(s) 443, 576
BbvI GCAGC 2 cut(s) 28, 181
BccI CCATC 3 cut(s) 366, 581, 644
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 3 cut(s) 404, 525, 647
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 854, 947
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 541
BisI GCNGC 6 cut(s) 17, 195, 294, 496, 938, 941
BlpI GCTNAGC 1 cut(s) 437
BlsI GCNGC 6 cut(s) 18, 196, 295, 497, 939, 942
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 4 cut(s) 290, 404, 525, 647
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 113, 271
BmiI GGNNCC 4 cut(s) 28, 115, 212, 273
BmrFI CCNGG 4 cut(s) 290, 404, 525, 647
BmsI GCATC 4 cut(s) 177, 372, 548, 598
BpiI GAAGAC 2 cut(s) 50, 757
BpmI CTGGAG 4 cut(s) 530, 735, 921, 927
Bpu1102I GCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 3 cut(s) 652, 725, 758
BpuMI CCSGG 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 459, 524
BsaWI WCCGGW 2 cut(s) 23, 361
BsaXI ACNNNNNCTCC 4 cut(s) 900, 903, 930, 933
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 292, 361
Bse1I ACTGG 3 cut(s) 186, 383, 806
Bse8I GATNNNNATC 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 3 cut(s) 404, 525, 647
BseDI CCNNGG 2 cut(s) 459, 524
BseGI GGATG 5 cut(s) 358, 387, 613, 655, 691
BseJI GATNNNNATC 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 3 cut(s) 186, 383, 806
BseRI GAGGAG 3 cut(s) 84, 270, 924
BseXI GCAGC 2 cut(s) 28, 181
BseYI CCCAGC 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 114, 870
BsiHKAI GWGCWC 2 cut(s) 443, 576
BsiSI CCGG 3 cut(s) 24, 290, 362
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 220, 292, 361
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 2 cut(s) 119, 471
BsnI GGCC 2 cut(s) 114, 870
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 443, 576
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 153, 262, 541, 819
Bsp1720I GCTNAGC 1 cut(s) 437
BspACI CCGC 5 cut(s) 117, 293, 324, 355, 495
BspANI GGCC 2 cut(s) 114, 870
BspCNI CTCAG 1 cut(s) 429
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 4 cut(s) 28, 115, 212, 273
BspMAI CTGCAG 1 cut(s) 858
BspQI GCTCTTC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 928
BsrBI CCGCTC 1 cut(s) 495
BsrI ACTGG 3 cut(s) 186, 383, 806
BssECI CCNNGG 2 cut(s) 459, 524
BssMI GATC 4 cut(s) 153, 262, 541, 819
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 404, 525, 647
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 2 cut(s) 58, 754
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 5 cut(s) 192, 257, 572, 831, 872
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 5 cut(s) 358, 387, 613, 655, 691
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 156, 265, 544, 822
BstMBI GATC 4 cut(s) 153, 262, 541, 819
BstMWI GCNNNNNNNGC 3 cut(s) 16, 567, 716
BstNI CCWGG 3 cut(s) 404, 525, 647
BstNSI RCATGY 4 cut(s) 204, 352, 701, 833
BstSCI CCNGG 4 cut(s) 288, 402, 523, 645
BstSFI CTRYAG 2 cut(s) 854, 947
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 28, 181
BstV2I GAAGAC 2 cut(s) 50, 757
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 2 cut(s) 114, 870
BtsCI GGATG 5 cut(s) 358, 387, 613, 655, 691
BtsIMutI CAGTG 2 cut(s) 179, 446
Cac8I GCNNGC 5 cut(s) 192, 257, 572, 831, 872
CaiI CAGNNNCTG 3 cut(s) 40, 839, 946
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 113, 271
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 247, 419
CviAII CATG 6 cut(s) 201, 349, 698, 780, 830, 887
CviQI GTAC 2 cut(s) 247, 419
DdeI CTNAG 1 cut(s) 437
DpnI GATC 4 cut(s) 155, 264, 543, 821
DpnII GATC 4 cut(s) 153, 262, 541, 819
DriI GACNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 58, 754
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 2 cut(s) 58, 754
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 4 cut(s) 62, 251, 399, 741
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 402, 523, 645
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 6 cut(s) 204, 352, 701, 783, 833, 890
FaqI GGGAC 1 cut(s) 257
FatI CATG 6 cut(s) 200, 348, 697, 779, 829, 886
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 239
FbaI TGATCA 1 cut(s) 819
Fnu4HI GCNGC 6 cut(s) 17, 195, 294, 496, 938, 941
FokI GGATG 5 cut(s) 345, 394, 620, 662, 698
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 6 cut(s) 17, 195, 294, 496, 938, 941
GlaI GCGC 1 cut(s) 219
GluI GCNGC 6 cut(s) 17, 195, 294, 496, 938, 941
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 4 cut(s) 530, 735, 921, 927
HaeIII GGCC 2 cut(s) 114, 870
HapII CCGG 3 cut(s) 24, 290, 362
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 220
Hin1II CATG 6 cut(s) 204, 352, 701, 783, 833, 890
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HinfI GANTC 5 cut(s) 337, 407, 488, 746, 930
HpaII CCGG 3 cut(s) 24, 290, 362
HphI GGTGA 2 cut(s) 115, 196
Hpy166II GTNNAC 1 cut(s) 844
Hpy188I TCNGA 2 cut(s) 42, 477
Hpy188III TCNNGA 7 cut(s) 131, 167, 362, 631, 683, 714, 787
Hpy8I GTNNAC 1 cut(s) 844
HpyAV CCTTC 2 cut(s) 805, 860
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 9 cut(s) 87, 395, 539, 598, 611, 829, 833, 856, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 567, 716
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 6 cut(s) 204, 352, 701, 783, 833, 890
HspAI GCGC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 4 cut(s) 153, 262, 541, 819
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 5 cut(s) 26, 234, 283, 716, 902
Lsp1109I GCAGC 2 cut(s) 28, 181
LweI GCATC 4 cut(s) 177, 372, 548, 598
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 128, 177, 338
MalI GATC 4 cut(s) 155, 264, 543, 821
MbiI CCGCTC 1 cut(s) 495
MboI GATC 4 cut(s) 153, 262, 541, 819
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 443, 576
MluCI AATT 2 cut(s) 452, 678
MlyI GAGTC 3 cut(s) 346, 497, 740
MmeI TCCRAC 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 831
MroI TCCGGA 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 3 cut(s) 24, 290, 362
MspR9I CCNGG 4 cut(s) 290, 404, 525, 647
Mva1269I GAATGC 2 cut(s) 119, 471
MvaI CCWGG 3 cut(s) 404, 525, 647
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 16, 567, 716
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 239
NdeII GATC 4 cut(s) 153, 262, 541, 819
NlaIII CATG 6 cut(s) 204, 352, 701, 783, 833, 890
NlaIV GGNNCC 4 cut(s) 28, 115, 212, 273
NmuCI GTSAC 3 cut(s) 128, 177, 338
NsiI ATGCAT 1 cut(s) 831
NspI RCATGY 4 cut(s) 204, 352, 701, 833
NspV TTCGAA 1 cut(s) 928
PaeI GCATGC 1 cut(s) 833
PceI AGGCCT 1 cut(s) 870
PciI ACATGT 2 cut(s) 200, 348
PciSI GCTCTTC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 222
PctI GAATGC 2 cut(s) 119, 471
PfeI GAWTC 2 cut(s) 407, 930
PflMI CCANNNNNTGG 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 6 cut(s) 18, 196, 295, 497, 939, 942
PleI GAGTC 3 cut(s) 345, 496, 740
PpsI GAGTC 3 cut(s) 345, 496, 740
PpuMI RGGWCCY 1 cut(s) 271
PscI ACATGT 2 cut(s) 200, 348
Psp124BI GAGCTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 402, 523, 645
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 3 cut(s) 402, 523, 645
PspN4I GGNNCC 4 cut(s) 28, 115, 212, 273
PspPI GGNCC 2 cut(s) 113, 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 3 cut(s) 40, 839, 946
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 2 cut(s) 248, 420
RsaNI GTAC 2 cut(s) 247, 419
SacI GAGCTC 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 58
SatI GCNGC 6 cut(s) 17, 195, 294, 496, 938, 941
Sau3AI GATC 4 cut(s) 153, 262, 541, 819
Sau96I GGNCC 2 cut(s) 113, 271
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 3 cut(s) 346, 497, 740
ScrFI CCNGG 4 cut(s) 290, 404, 525, 647
SduI GDGCHC 2 cut(s) 443, 576
SfaNI GCATC 4 cut(s) 177, 372, 548, 598
SfcI CTRYAG 2 cut(s) 854, 947
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 3 cut(s) 631, 740, 773
SmoI CTYRAG 3 cut(s) 631, 740, 773
SphI GCATGC 1 cut(s) 833
Sse9I AATT 2 cut(s) 452, 678
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 5 cut(s) 117, 293, 324, 355, 495
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 4 cut(s) 288, 402, 523, 645
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 144
TaqI TCGA 6 cut(s) 225, 375, 491, 556, 726, 928
TasI AATT 2 cut(s) 452, 678
TatI WGTACW 1 cut(s) 418
TauI GCSGC 2 cut(s) 296, 498
TfiI GAWTC 2 cut(s) 407, 930
TscAI CASTG 2 cut(s) 186, 453
TseFI GTSAC 3 cut(s) 128, 177, 338
TseI GCWGC 4 cut(s) 16, 194, 937, 940
Tsp45I GTSAC 3 cut(s) 128, 177, 338
TspDTI ATGAA 2 cut(s) 681, 879
TspGWI ACGGA 2 cut(s) 164, 186
TspRI CASTG 2 cut(s) 186, 453
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 452, 678
XceI RCATGY 4 cut(s) 204, 352, 701, 833
ZrmI AGTACT 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.