RchiOBHm_Chr1g0360711

cytochrome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011592
Physical Location & Seq
Forward (+)
52542151 .. 52544182
2032 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGGCTTCAGATTCTAAAGTCTATCACTTTGATGAGGTGGCACAGCACAAGTACAAGAAAGATTGCTGGATTATAGTCTCTGGAAAGGTTTATGATGTCACTCCTTTTCTGGAGGAACACCCTGGAGGTGATGAAGTCTTGCTATTAGCAGCTGATAGGGATGCAACTGATGATTTCAATGATGTTGGCCACAGCGATTCTGCAAAGGAGATGATGGAAAAGTACTACGTAGGCGAGGTTGACACATCCACAATACCAGAGCAGCCAAATTACAAGCTGCCTGCACAAGCAACAGCTCCTCAAGCTGACCAATCTTCTGGATTTGTGGTAAAACTTCTACAGTTTCTGCTGCCCTTGTTGATCTTGGGGGCTGCATTTGCTCTGCAATACTACAGTAAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

4.83

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 11 - 80 9.9e-29 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 2 cut(s) 53, 224
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 152, 277, 296, 305
AluI AGCT 4 cut(s) 152, 277, 296, 305
Alw26I GTCTC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 5 cut(s) 149, 262, 277, 349, 371
AsuHPI GGTGA 1 cut(s) 140
BalI TGGCCA 1 cut(s) 189
BbvI GCAGC 5 cut(s) 161, 264, 274, 336, 358
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 2 cut(s) 338, 391
BisI GCNGC 5 cut(s) 150, 263, 278, 350, 372
BlsI GCNGC 5 cut(s) 151, 264, 279, 351, 373
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 2 cut(s) 131, 144
BpuEI CTTGAG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 166, 245
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 5 cut(s) 161, 264, 274, 336, 358
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 360
BspANI GGCC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 342, 395
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 282
BstF5I GGATG 2 cut(s) 166, 245
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 302, 377
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 338, 391
BstSNI TACGTA 1 cut(s) 229
BstV1I GCAGC 5 cut(s) 161, 264, 274, 336, 358
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 166, 245
Cac8I GCNNGC 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 346
Csp6I GTAC 2 cut(s) 52, 223
CviJI RGCY 8 cut(s) 5, 152, 189, 265, 277, 296, 305, 371
CviKI_1 RGCY 8 cut(s) 5, 152, 189, 265, 277, 296, 305, 371
CviQI GTAC 2 cut(s) 52, 223
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 121
FaiI YATR 2 cut(s) 74, 93
Fnu4HI GCNGC 5 cut(s) 150, 263, 278, 350, 372
FokI GGATG 2 cut(s) 173, 232
Fsp4HI GCNGC 5 cut(s) 150, 263, 278, 350, 372
GluI GCNGC 5 cut(s) 150, 263, 278, 350, 372
GsuI CTGGAG 2 cut(s) 131, 144
HaeIII GGCC 1 cut(s) 189
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 11, 197
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 81, 110, 318
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 342, 395
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 164, 203, 284, 374, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 377
HpySE526I ACGT 1 cut(s) 228
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 52, 66, 95, 108, 135, 270, 294, 303
Lsp1109I GCAGC 5 cut(s) 161, 264, 274, 336, 358
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 5 cut(s) 28, 106, 119, 229, 309
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 302, 377
NdeII GATC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 11, 197
PkrI GCNGC 5 cut(s) 151, 264, 279, 351, 373
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 53, 224
RsaNI GTAC 2 cut(s) 52, 223
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 5 cut(s) 150, 263, 278, 350, 372
Sau3AI GATC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 123
SetI ASST 9 cut(s) 39, 90, 130, 154, 231, 240, 279, 298, 307
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 2 cut(s) 338, 391
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
SnaBI TACGTA 1 cut(s) 229
Sse9I AATT 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 342, 395
TaiI ACGT 1 cut(s) 231
TasI AATT 1 cut(s) 268
TatI WGTACW 2 cut(s) 51, 222
TfiI GAWTC 2 cut(s) 11, 197
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 5 cut(s) 149, 262, 277, 349, 371
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.