RchiOBHm_Chr1g0364021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009716
Physical Location & Seq
Forward (+)
55285540 .. 55286673
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGGTTGCCCAATTAGACTCGAACCTTGCCGTAGAAGAAAACCCAGATAACCAATTACAGAATCAACAGGATGATCCATATGAAGCAGAAGAAACACTCTCTCTTTGTGATCTGCCTACATACAGTGACTCGTCTCATTGGGACGACTTCTCCAAAGATTATCAGAGCTCCTCTTTTGATCAAGATGAAGACAACTTCTTTGAGTTCTTCAGTGAAGAGTTCACAGCCTCAACATACCCATCTGGGAATAAAGACATCATCTTCTGTGGGAAGCTCATTCCCTACAACAAAGAAGCTCCACATGTTGCTACAGTAGAGAAGAAAACCCAGAAGAACCCAGAACAGAGCAACAAAAAATACAGCAGTTCCACCAAGAAATGGAGCCTTTTTCGGTGGAGAAGGTTTAGGGGATCGAAACACAGGGTAGTTAAACCAAGTCAAGTTAAAGATGCTATTAGTGCTAGTGCTACTAATACCATTTCATTTTCCGCATCAAAAAACTACAGAAGGTGTGATCTTTCACTTGGGAAAGTGTCAATTCTTTCGAGTAACCGATCAAAATCGAAGTGGTATTTGTACATGTTTGGAATGGCGAGGTTTCCTACAGAGATGGAGCTGAGGGACATTAAGAGCAGGCAAAGCAGGAGGAGCCCATCGACCATGTTTGGGGCTAATTGTGAAGCAAGTGATGAATTAATGGGGAAGGGTAGCAAGGGAATTAGCGATAGTAGTAATAGAGCGAAAGGGTTGTGGGGGTTGTTGAGAGCGATAGGGTGTAGTAGTCAGCATCCAAACGCCGTCGTAAAGGCAGCTTCGTTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.98

Weight (kDa)

8.67

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AciI CCGC 1 cut(s) 489
AclWI GGATC 2 cut(s) 68, 418
AcuI CTGAAG 1 cut(s) 193
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 378, 666
AflIII ACRYGT 2 cut(s) 301, 579
AluBI AGCT 6 cut(s) 168, 274, 296, 616, 812, 822
AluI AGCT 6 cut(s) 168, 274, 296, 616, 812, 822
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 68, 418
ApeKI GCWGC 1 cut(s) 809
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AseI ATTAAT 1 cut(s) 695
BanII GRGCYC 2 cut(s) 170, 653
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 1 cut(s) 821
BccI CCATC 3 cut(s) 247, 604, 661
BceAI ACGGC 2 cut(s) 14, 782
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 462, 823
BfmI CTRYAG 3 cut(s) 309, 502, 603
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
BmiI GGNNCC 2 cut(s) 383, 650
BmsI GCATC 3 cut(s) 439, 500, 796
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 666
Bse8I GATNNNNATC 1 cut(s) 559
BseGI GGATG 2 cut(s) 76, 787
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 378, 666
BseMII CTCAG 1 cut(s) 608
BseRI GAGGAG 2 cut(s) 160, 661
BseXI GCAGC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 170
BslFI GGGAC 2 cut(s) 155, 635
BslI CCNNNNNNNGG 2 cut(s) 378, 666
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 155, 635
Bsp1286I GDGCHC 2 cut(s) 170, 653
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 6 cut(s) 73, 109, 178, 410, 514, 554
BspACI CCGC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 609
BspLI GGNNCC 2 cut(s) 383, 650
BspPI GGATC 2 cut(s) 68, 418
BsrGI TGTACA 1 cut(s) 576
BssMI GATC 6 cut(s) 73, 109, 178, 410, 514, 554
Bst4CI ACNGT 2 cut(s) 125, 313
Bst6I CTCTTC 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 76, 787
BstKTI GATC 6 cut(s) 76, 112, 181, 413, 517, 557
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 6 cut(s) 73, 109, 178, 410, 514, 554
BstMWI GCNNNNNNNGC 3 cut(s) 458, 639, 648
BstNSI RCATGY 2 cut(s) 305, 583
BstSFI CTRYAG 3 cut(s) 309, 502, 603
BstV1I GCAGC 1 cut(s) 821
BstV2I GAAGAC 1 cut(s) 195
BtsCI GGATG 2 cut(s) 76, 787
BtsIMutI CAGTG 2 cut(s) 130, 217
Cac8I GCNNGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 577
CviAII CATG 3 cut(s) 302, 580, 661
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 1 cut(s) 617
DpnI GATC 6 cut(s) 75, 111, 180, 412, 516, 556
DpnII GATC 6 cut(s) 73, 109, 178, 410, 514, 554
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 170, 653
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 168
EcoT38I GRGCYC 2 cut(s) 170, 653
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 305, 583, 664
FaiI YATR 7 cut(s) 79, 81, 121, 235, 303, 581, 662
FaqI GGGAC 2 cut(s) 155, 635
FatI CATG 3 cut(s) 301, 579, 660
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 2 cut(s) 83, 774
FriOI GRGCYC 2 cut(s) 170, 653
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 2 cut(s) 462, 823
GluI GCNGC 1 cut(s) 810
Hin1II CATG 3 cut(s) 305, 583, 664
HinfI GANTC 3 cut(s) 17, 61, 128
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 3 cut(s) 393, 501, 697
HpyCH4III ACNGT 2 cut(s) 125, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 639, 648
HpyF3I CTNAG 1 cut(s) 617
Hsp92II CATG 3 cut(s) 305, 583, 664
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 6 cut(s) 73, 109, 178, 410, 514, 554
LmnI GCTCC 5 cut(s) 173, 301, 381, 613, 648
LpnPI CCDG 8 cut(s) 53, 57, 228, 341, 351, 406, 619, 628
Lsp1109I GCAGC 1 cut(s) 821
LweI GCATC 3 cut(s) 439, 500, 796
MaeI CTAG 2 cut(s) 462, 823
MaeIII GTNAC 2 cut(s) 125, 548
MalI GATC 6 cut(s) 75, 111, 180, 412, 516, 556
MboI GATC 6 cut(s) 73, 109, 178, 410, 514, 554
MboII GAAGA 8 cut(s) 47, 101, 199, 200, 227, 253, 331, 343
MhlI GDGCHC 2 cut(s) 170, 653
MluCI AATT 6 cut(s) 11, 53, 537, 673, 692, 717
MlyI GAGTC 2 cut(s) 11, 122
MnlI CCTC 5 cut(s) 181, 238, 588, 612, 639
MseI TTAA 4 cut(s) 429, 444, 627, 695
MwoI GCNNNNNNNGC 3 cut(s) 458, 639, 648
NdeI CATATG 1 cut(s) 79
NdeII GATC 6 cut(s) 73, 109, 178, 410, 514, 554
NlaIII CATG 3 cut(s) 305, 583, 664
NlaIV GGNNCC 2 cut(s) 383, 650
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 2 cut(s) 305, 583
PciI ACATGT 2 cut(s) 301, 579
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 2 cut(s) 11, 122
PpsI GAGTC 2 cut(s) 11, 122
PscI ACATGT 2 cut(s) 301, 579
PshBI ATTAAT 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 383, 650
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 4 cut(s) 429, 444, 627, 695
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 6 cut(s) 73, 109, 178, 410, 514, 554
SchI GAGTC 2 cut(s) 11, 122
SduI GDGCHC 2 cut(s) 170, 653
SfaNI GCATC 3 cut(s) 439, 500, 796
SfcI CTRYAG 3 cut(s) 309, 502, 603
Sse9I AATT 6 cut(s) 11, 53, 537, 673, 692, 717
SsiI CCGC 1 cut(s) 489
SspMI CTAG 2 cut(s) 462, 823
SstI GAGCTC 1 cut(s) 170
TaaI ACNGT 2 cut(s) 125, 313
TaqI TCGA 5 cut(s) 20, 413, 545, 563, 656
TasI AATT 6 cut(s) 11, 53, 537, 673, 692, 717
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 4 cut(s) 429, 444, 627, 695
Tru9I TTAA 4 cut(s) 429, 444, 627, 695
TscAI CASTG 2 cut(s) 130, 217
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 96, 201, 471, 705
TspRI CASTG 2 cut(s) 130, 217
Van91I CCANNNNNTGG 1 cut(s) 378
VspI ATTAAT 1 cut(s) 695
XceI RCATGY 2 cut(s) 305, 583
XspI CTAG 2 cut(s) 462, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.