Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

58614641 .. 58618047

Gene Structure 3407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAGGCACTTATTCTCGTTGGAGGTTTTGGAACACGTTTGAGGCCATTGACACTTAGTGTCCCTAAGCCACTTGTTGACTTTGCCAACAAGCCCATGATCCTGCATCAGATTGAGGCCCTTAAGGCAATTGGTGTGACCGAAGTGGTTCTGGCTATCAATTACCAACCAGAGGTGATGCTGAATTTCTTGAAGGAGTTTGAGACAAAGGTTGGGATCAAGATCACATGTTCACAAGAGACTGAACCCCTTGGCACTGCTGGTCCTCTGGCTCTTGCTAGGGACAAACTGATAGACGAATCTGGTGAACCCTTCTTTGTCCTTAACAGTGATGTGATCAGTGATTACCCACTAAAAGAAATGATTGAATTCCATAAATCCCATGGAGGAGAGGCTTCTATAATGGTGACCAAGGTGGATGAGCCATCAAAATATGGAGTGGTGGTTATGGAAGAGTCTACAGGGAAAGTGGAGAAATTTGTGGAGAAACCAAAATTGTTTGTTGGCAACAAAATCAATGCTGGAATATATTTGTTGAATCCCGAAGTTCTTGATCGTATTCAACTGAGACCAACCTCAATTGAGAAAGAGGTTTTCCCAAAGATTGCATCAGAGAATAAGCTCTTTGCAATGGTCCTTCCTGGGTTTTGGATGGACATTGGACAGCCAAAGGATTATATCACAGGCCTGAGACTCTACTTAGACTCGTTGAGGAAGAAGTCTTCATCTAAGTTGTCCAATGGCACCCACATCGTGGGAAATGTTCTGGTAGATGAGACTGCTACAATTGGTGAGGGGTGCCTGATTGGACCAGATGTTGCAATTGGTCCCGGCTGTGTGGTTGAATCAGGAGTTAGGCTTTCTCGCTGCACGGTAATGCGCGGTGTTCGGATCAAGAAGCATGCTTGCATTTCCAGTAGTATCATTGGATGGCACTCCACTGTTGGGCAATGGGCTCGTGTGGAGAACATGACTATCCTTGGTGAAGATGTTCACGTAAGTGATGAAATCTACAGCAATGGAGGTGTGGTTTTGCCTCACAAAGAAATCAAGTCGAGCATTTTGAAGCCAGAGATTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

361

Amino Acids

39.59

Weight (kDa)

6.48

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	2 - 233	7.1e-61	Nucleotidyl transferase
NTP_transf_3	PF12804	3 - 136	7.9e-09	MobA-like NTP transferase domain
LbH_EIF2B	PF25084	239 - 337	4.1e-13	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	251 - 360	1.2e-43	GMPPB C-terminal domain
Hexapep	PF00132	261 - 294	2.7e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	743, 798
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	458
AccII	CGCG	1 cut(s)	882
AciI	CCGC	1 cut(s)	882
AclWI	GGATC	3 cut(s)	94, 224, 899
AcsI	RAATTY	3 cut(s)	184, 368, 476
AdeI	CACNNNGTG	2 cut(s)	59, 754
AfiI	CCNNNNNNNGG	3 cut(s)	172, 754, 945
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	2 cut(s)	35, 227
AgsI	TTSAA	6 cut(s)	193, 368, 538, 563, 845, 1066
AjnI	CCWGG	1 cut(s)	640
AleI	CACNNNNGTG	1 cut(s)	999
AluBI	AGCT	1 cut(s)	622
AluI	AGCT	1 cut(s)	622
Alw26I	GTCTC	5 cut(s)	197, 233, 562, 685, 770
AlwI	GGATC	3 cut(s)	94, 224, 899
AoxI	GGCC	3 cut(s)	44, 117, 685
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	3 cut(s)	184, 368, 476
Asp700I	GAANNNNTTC	2 cut(s)	147, 990
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	5 cut(s)	118, 263, 634, 809, 827
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	5 cut(s)	187, 317, 418, 803, 995
AvaII	GGWCC	4 cut(s)	263, 634, 809, 827
BanI	GGYRCC	2 cut(s)	743, 798
BanII	GRGCYC	1 cut(s)	958
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	3 cut(s)	433, 646, 924
BcgI	CGANNNNNNTGC	4 cut(s)	733, 767, 938, 972
BciT130I	CCWGG	1 cut(s)	642
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	459, 1012
BfrI	CTTAAG	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	868
BlsI	GCNGC	1 cut(s)	869
Bme1390I	CCNGG	2 cut(s)	642, 831
Bme18I	GGWCC	4 cut(s)	263, 634, 809, 827
BmgT120I	GGNCC	5 cut(s)	118, 263, 634, 809, 827
BmiI	GGNNCC	3 cut(s)	745, 800, 829
BmrFI	CCNGG	2 cut(s)	642, 831
BmsI	GCATC	3 cut(s)	115, 168, 617
BpiI	GAAGAC	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	5 cut(s)	250, 382, 411, 641, 979
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 1014, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 754, 945
Bse1I	ACTGG	1 cut(s)	915
Bse3DI	GCAATG	3 cut(s)	636, 956, 1024
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	5 cut(s)	250, 382, 411, 641, 979
BseGI	GGATG	3 cut(s)	424, 657, 935
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	172, 754, 945
BseMI	GCAATG	3 cut(s)	636, 956, 1024
BseMII	CTCAG	2 cut(s)	557, 680
BseNI	ACTGG	1 cut(s)	915
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	853
Bsh1236I	CGCG	1 cut(s)	882
BshFI	GGCC	3 cut(s)	46, 119, 687
BshNI	GGYRCC	2 cut(s)	743, 798
BsiSI	CCGG	1 cut(s)	831
BslFI	GGGAC	3 cut(s)	47, 296, 813
BslI	CCNNNNNNNGG	3 cut(s)	172, 754, 945
BsmAI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BsmFI	GGGAC	3 cut(s)	47, 296, 813
BsnI	GGCC	3 cut(s)	46, 119, 687
Bso31I	GGTCTC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	3 cut(s)	46, 119, 687
BspCNI	CTCAG	2 cut(s)	558, 681
BspFNI	CGCG	1 cut(s)	882
BspLI	GGNNCC	3 cut(s)	745, 800, 829
BspPI	GGATC	3 cut(s)	94, 224, 899
BspT107I	GGYRCC	2 cut(s)	743, 798
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	562
BsrDI	GCAATG	3 cut(s)	636, 956, 1024
BsrI	ACTGG	1 cut(s)	915
BssECI	CCNNGG	5 cut(s)	250, 382, 411, 641, 979
BssMI	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	4 cut(s)	250, 382, 411, 979
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	329, 874, 943
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	2 cut(s)	903, 907
BstDEI	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	424, 657, 935
BstFNI	CGCG	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	882
BstKTI	GATC	6 cut(s)	102, 219, 225, 339, 556, 894
BstMAI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BstMBI	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	2 cut(s)	231, 905
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	640, 829
BstSFI	CTRYAG	2 cut(s)	459, 1012
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	714
BsuRI	GGCC	3 cut(s)	46, 119, 687
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	3 cut(s)	424, 657, 935
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	255, 334, 346, 939
Cac8I	GCNNGC	2 cut(s)	903, 907
CfoI	GCGC	1 cut(s)	882
Cfr13I	GGNCC	5 cut(s)	118, 263, 634, 809, 827
CviAII	CATG	5 cut(s)	97, 228, 383, 902, 970
DdeI	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
DpnI	GATC	6 cut(s)	101, 218, 224, 338, 555, 893
DpnII	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
DraIII	CACNNNGTG	2 cut(s)	59, 754
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	4 cut(s)	250, 382, 411, 979
Eco147I	AGGCCT	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	4 cut(s)	263, 634, 809, 827
Eco91I	GGTNACC	1 cut(s)	406
EcoO109I	RGGNCCY	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	4 cut(s)	250, 382, 411, 979
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	4 cut(s)	250, 382, 411, 979
FaeI	CATG	5 cut(s)	100, 231, 386, 905, 973
FaqI	GGGAC	3 cut(s)	47, 296, 813
FatI	CATG	5 cut(s)	96, 227, 382, 901, 969
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	868
FokI	GGATG	3 cut(s)	431, 664, 942
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	1 cut(s)	868
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	1 cut(s)	868
HaeIII	GGCC	3 cut(s)	46, 119, 687
HapII	CCGG	1 cut(s)	831
HhaI	GCGC	1 cut(s)	882
Hin1II	CATG	5 cut(s)	100, 231, 386, 905, 973
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	6 cut(s)	299, 455, 538, 693, 704, 845
HpaII	CCGG	1 cut(s)	831
HphI	GGTGA	5 cut(s)	187, 317, 418, 803, 995
Hpy166II	GTNNAC	5 cut(s)	79, 233, 308, 459, 994
Hpy188I	TCNGA	3 cut(s)	111, 613, 891
Hpy188III	TCNNGA	6 cut(s)	190, 220, 542, 551, 849, 895
Hpy8I	GTNNAC	5 cut(s)	79, 233, 308, 459, 994
HpyAV	CCTTC	3 cut(s)	187, 322, 647
HpyCH4III	ACNGT	3 cut(s)	329, 874, 943
HpyCH4IV	ACGT	2 cut(s)	37, 996
HpyCH4V	TGCA	6 cut(s)	106, 608, 629, 821, 870, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
HpySE526I	ACGT	2 cut(s)	37, 996
Hsp92II	CATG	5 cut(s)	100, 231, 386, 905, 973
HspAI	GCGC	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	3 cut(s)	115, 168, 617
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	37, 996
MaeIII	GTNAC	2 cut(s)	136, 406
MalI	GATC	6 cut(s)	101, 218, 224, 338, 555, 893
MboI	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
MboII	GAAGA	4 cut(s)	464, 714, 727, 998
MfeI	CAATTG	4 cut(s)	129, 579, 786, 822
MhlI	GDGCHC	1 cut(s)	958
MluCI	AATT	9 cut(s)	129, 160, 184, 368, 476, 494, 579, 786, 822
MlyI	GAGTC	3 cut(s)	464, 687, 698
MroXI	GAANNNNTTC	2 cut(s)	147, 990
MseI	TTAA	2 cut(s)	123, 324
MslI	CAYNNNNRTG	2 cut(s)	875, 999
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	831
MspR9I	CCNGG	2 cut(s)	642, 831
MunI	CAATTG	4 cut(s)	129, 579, 786, 822
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	831
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
NlaIII	CATG	5 cut(s)	100, 231, 386, 905, 973
NlaIV	GGNNCC	3 cut(s)	745, 800, 829
NmuCI	GTSAC	2 cut(s)	136, 406
NspI	RCATGY	2 cut(s)	231, 905
OliI	CACNNNNGTG	1 cut(s)	999
PaeI	GCATGC	1 cut(s)	905
PceI	AGGCCT	1 cut(s)	687
PciI	ACATGT	1 cut(s)	227
PdmI	GAANNNNTTC	2 cut(s)	147, 990
PfeI	GAWTC	3 cut(s)	299, 538, 845
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	1 cut(s)	869
PleI	GAGTC	3 cut(s)	463, 687, 698
PpsI	GAGTC	3 cut(s)	463, 687, 698
Ppu21I	YACGTR	1 cut(s)	997
PscI	ACATGT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	745, 800, 829
PspPI	GGNCC	5 cut(s)	118, 263, 634, 809, 827
RseI	CAYNNNNRTG	2 cut(s)	875, 999
SaqAI	TTAA	2 cut(s)	123, 324
SatI	GCNGC	1 cut(s)	868
Sau3AI	GATC	6 cut(s)	99, 216, 222, 336, 553, 891
Sau96I	GGNCC	5 cut(s)	118, 263, 634, 809, 827
SchI	GAGTC	3 cut(s)	464, 687, 698
ScrFI	CCNGG	2 cut(s)	642, 831
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	3 cut(s)	115, 168, 617
SfcI	CTRYAG	2 cut(s)	459, 1012
SinI	GGWCC	4 cut(s)	263, 634, 809, 827
SmiMI	CAYNNNNRTG	2 cut(s)	875, 999
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	9 cut(s)	129, 160, 184, 368, 476, 494, 579, 786, 822
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	640, 829
StyI	CCWWGG	4 cut(s)	250, 382, 411, 979
TaaI	ACNGT	3 cut(s)	329, 874, 943
TaiI	ACGT	2 cut(s)	40, 999
TaqI	TCGA	1 cut(s)	1055
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	9 cut(s)	129, 160, 184, 368, 476, 494, 579, 786, 822
TfiI	GAWTC	3 cut(s)	299, 538, 845
Tru1I	TTAA	2 cut(s)	123, 324
Tru9I	TTAA	2 cut(s)	123, 324
TscAI	CASTG	4 cut(s)	262, 334, 346, 946
TseFI	GTSAC	2 cut(s)	136, 406
TseI	GCWGC	1 cut(s)	867
Tsp45I	GTSAC	2 cut(s)	136, 406
TspDTI	ATGAA	3 cut(s)	17, 714, 1020
TspRI	CASTG	4 cut(s)	262, 334, 346, 946
Van91I	CCANNNNNTGG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	4 cut(s)	263, 634, 809, 827
XapI	RAATTY	3 cut(s)	184, 368, 476
XceI	RCATGY	2 cut(s)	231, 905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	147, 990
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.