Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014474

Physical Location & Seq

Genomic Coordinates Forward (+)

61094694 .. 61096380

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGTCTGGATTTTCTTCTTCTTCAATGGGTTTCATGGAAAATGTGGAGCAACCTCATGTTTTGGCTGTGGATGACAGTGATATTGATCGGAAACTTATCGAAAAGCTGCTCAAGAATTTCTCTTGCAAAGTGACTACTGCAGAAAATGGGGCAAGAGCATTGGAGTTTCTAGGCTTGGGAGATCATCCAAACCATTGCAATGTCTCAAAGGTAAATCTGGTAATTACAGATTATTGCATGCCAGGAATGACAGGATATGAACTGCTTAAGAAAATCAAGGAATCATCAGTCATGAAGGAGGTTCCAGTGGTGATTATGTCATCTGAAAATATACCAAATCGGATTAGCAAGTGCTTGGAGGAAGGAGCTCAGATGTTCATGCTAAAACCGATCAAACAGTCGGACATTAAGCAATTGAGATGTCATCTGATGAATTGCAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

6.42

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	21 - 139	5.5e-22	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56380 AT3G56380
fragaria_vesca	FvH4_7g25970
malus_domestica	MD01G1168100.v1.1 MD07G1234100.v1.1
prunus_persica	Prupe.2G264500_v2.0.a1
pyrus_communis	pycom01g18110 pycom07g21190
rosa_chinensis	RchiOBHm_Chr1g0372351
rosa_laevigata	RLG00000026905
rosa_roxburghii	Rroxscaffold_4G00285020
rosa_rugosa	Rorug01G0371300 Rorug01G0371300
rosa_samantha	Rh1AG379800 Rh1BG343300 Rh1CG356800
rosa_wichuraiana	Rw1G033390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	118
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	109, 371, 447
AluI	AGCT	3 cut(s)	109, 371, 447
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	196, 208
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	79, 187
BseJI	GATNNNNATC	1 cut(s)	87
BseMI	GCAATG	2 cut(s)	196, 208
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	88, 184, 393
BspCNI	CTCAG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	196, 208
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	88, 184, 393
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	80, 402
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	79, 187
BstKTI	GATC	3 cut(s)	91, 187, 396
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	88, 184, 393
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	79, 187
BtsIMutI	CAGTG	2 cut(s)	85, 315
Cac8I	GCNNGC	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	294
CviAII	CATG	5 cut(s)	37, 59, 241, 295, 382
CviJI	RGCY	5 cut(s)	68, 109, 177, 371, 447
CviKI_1	RGCY	5 cut(s)	68, 109, 177, 371, 447
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	90, 186, 395
DpnII	GATC	3 cut(s)	88, 184, 393
Ecl136II	GAGCTC	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	5 cut(s)	40, 62, 244, 298, 385
FaiI	YATR	8 cut(s)	38, 60, 242, 261, 296, 320, 335, 383
FatI	CATG	5 cut(s)	36, 58, 240, 294, 381
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	86, 174
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	40, 62, 244, 298, 385
HinfI	GANTC	2 cut(s)	5, 284
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	6 cut(s)	93, 328, 345, 375, 406, 432
Hpy188III	TCNNGA	3 cut(s)	9, 115, 295
HpyAV	CCTTC	2 cut(s)	292, 359
HpyCH4III	ACNGT	2 cut(s)	80, 402
HpyCH4V	TGCA	5 cut(s)	129, 143, 201, 240, 441
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	40, 62, 244, 298, 385
Kzo9I	GATC	3 cut(s)	88, 184, 393
LmnI	GCTCC	3 cut(s)	49, 368, 444
LpnPI	CCDG	6 cut(s)	206, 231, 240, 258, 321, 427
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	90, 186, 395
MboI	GATC	3 cut(s)	88, 184, 393
MboII	GAAGA	3 cut(s)	9, 12, 15
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	118, 225, 416, 436
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	66, 295, 355
MseI	TTAA	2 cut(s)	270, 411
MslI	CAYNNNNRTG	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	88, 184, 393
NlaIII	CATG	5 cut(s)	40, 62, 244, 298, 385
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	270, 411
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	88, 184, 393
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	6 cut(s)	58, 111, 216, 306, 373, 449
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	113, 269
SmoI	CTYRAG	2 cut(s)	113, 269
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	4 cut(s)	118, 225, 416, 436
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	80, 402
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	118, 225, 416, 436
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	270, 411
Tru9I	TTAA	2 cut(s)	270, 411
TscAI	CASTG	2 cut(s)	85, 315
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	25, 276, 311, 370, 449
TspRI	CASTG	2 cut(s)	85, 315
Vha464I	CTTAAG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.