RchiOBHm_Chr1g0373551

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016042
Physical Location & Seq
Forward (+)
61730573 .. 61731295
723 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGTTGAACGGGTACCAATTCTACGATTACGTTCCTGTTCCCGTTCCCGTCGAGCAGTACTTCCACCATGGCCATGACACCGGCTTCTTCAGCTCCGACGAGTTCCGGATGTACTCCTACAAAATCAAGCGCTGCCCGAGAATGCGCAGCCACGACTGGACCGACTGCCCCTACGCCCATCGCGGCGAGAAAGCACAGCGCCGCGACCCGCGTAGGTATCCCTACGCCGCCATAGTCTGCCCGGCCTTCCGCAACGGCGTCTGCTACAAGGGCGACGCGTGCGAGTACGCGCACGGGGTGTTCGAGTACTGGCTCCACCCTGCGCGTTACCGCACGCGCGCCTGCAATGCGGGCCTGTTGTGCACCCGCAAGGTCTGCTTCTTTGCTCACTCCCCGGACCAGCTGCGGGTCCCGCCACCCGAGTCGACCAAATCGTTCAAGTGTCGACAGCACCACAACAACTTTGTCTATCGCCCCGTCGGAGATCACTTGCTGATGAGCGGTGCCAATGGAGCCACCTCAGTGCGGTCGCCAGAACGGTTGGCGACAAATAACAATGTTATTGTCGCCGACAGGTTCTCTGAATTTTTGAGCAGTTTGAGGGCATTGAAGTTAAATGATCAGGAGGGCAATGGTGGTAGTGGTGAGGTGGATATGAGGGTCGACGAGAATGGGCTGCCGGAAACTTTGGAGGTTGATTGGGTTTCGGAGCTGTTGCAGTAA

Protein Analysis

240

Amino Acids

27.67

Weight (kDa)

8.06

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 34 - 67 2.2e-19 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07500
fragaria_vesca FvH4_7g26870
malus_domestica MD07G1248000.v1.1
prunus_persica Prupe.2G272000_v2.0.a1
pyrus_communis pycom07g22170
rosa_chinensis RchiOBHm_Chr1g0373551
rosa_laevigata RLG00000026816
rosa_multiflora Rmu_sc0002860.1_g000004
rosa_roxburghii Rroxscaffold_4G00284150
rosa_rugosa Rorug01G0378100
rosa_samantha Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana Rw1G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 2 cut(s) 12, 503
AccBSI CCGCTC 1 cut(s) 501
AccI GTMKAC 3 cut(s) 425, 445, 663
AccII CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
AccIII TCCGGA 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 5 cut(s) 14, 59, 113, 287, 308
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 406, 525
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 7, 439, 610
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 3 cut(s) 93, 403, 712
AluI AGCT 3 cut(s) 93, 403, 712
Alw21I GWGCWC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 361
Ama87I CYCGRG 2 cut(s) 136, 419
Aor13HI TCCGGA 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 3 cut(s) 70, 243, 352
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 132, 147, 403, 676
ApoI RAATTY 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
AspS9I GGNCC 4 cut(s) 159, 352, 397, 409
AsuC2I CCSGG 2 cut(s) 242, 395
AsuHPI GGTGA 1 cut(s) 656
AvaI CYCGRG 2 cut(s) 136, 419
AvaII GGWCC 3 cut(s) 159, 397, 409
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 72
BanI GGYRCC 2 cut(s) 12, 503
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 119, 159, 390, 663
BccI CCATC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 271
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 2 cut(s) 242, 395
BfoI RGCGCY 2 cut(s) 133, 202
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
BlsI GCNGC 7 cut(s) 134, 149, 185, 203, 229, 405, 678
BmcAI AGTACT 2 cut(s) 59, 308
Bme1390I CCNGG 2 cut(s) 242, 395
Bme18I GGWCC 3 cut(s) 159, 397, 409
BmeT110I CYCGRG 2 cut(s) 136, 419
BmgT120I GGNCC 4 cut(s) 159, 352, 397, 409
BmiI GGNNCC 6 cut(s) 14, 314, 410, 411, 505, 514
BmrFI CCNGG 2 cut(s) 242, 395
BpuMI CCSGG 2 cut(s) 242, 395
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 67, 393
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 525
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 161, 314
Bse3DI GCAATG 2 cut(s) 352, 637
BseAI TCCGGA 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 67, 393
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 406, 525
BseMI GCAATG 2 cut(s) 352, 637
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 2 cut(s) 161, 314
BsePI GCGCGC 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 4 cut(s) 119, 159, 390, 663
Bsh1236I CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 3 cut(s) 72, 245, 354
BshNI GGYRCC 2 cut(s) 12, 503
BsiEI CGRYCG 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 2 cut(s) 136, 419
BsiSI CCGG 5 cut(s) 81, 106, 242, 395, 680
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 406, 525
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 3 cut(s) 72, 245, 354
BsoBI CYCGRG 2 cut(s) 136, 419
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 484, 619
Bsp19I CCATGG 1 cut(s) 67
BspANI GGCC 3 cut(s) 72, 245, 354
BspCNI CTCAG 1 cut(s) 533
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BspLI GGNNCC 6 cut(s) 14, 314, 410, 411, 505, 514
BspT107I GGYRCC 2 cut(s) 12, 503
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 352, 637
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 161, 314
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 67, 393
BssHII GCGCGC 1 cut(s) 337
BssMI GATC 2 cut(s) 484, 619
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 280, 335, 339, 343, 352
BstDEI CTNAG 1 cut(s) 520
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BstH2I RGCGCY 2 cut(s) 133, 202
BstHHI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
BstKTI GATC 2 cut(s) 487, 622
BstMBI GATC 2 cut(s) 484, 619
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
BstSCI CCNGG 2 cut(s) 240, 393
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BstV1I GCAGC 4 cut(s) 119, 159, 390, 663
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 3 cut(s) 72, 245, 354
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 5 cut(s) 280, 335, 339, 343, 352
CfoI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 4 cut(s) 159, 352, 397, 409
CseI GACGC 2 cut(s) 247, 284
Csp6I GTAC 5 cut(s) 13, 58, 112, 286, 307
CviAII CATG 2 cut(s) 68, 74
CviQI GTAC 5 cut(s) 13, 58, 112, 286, 307
DdeI CTNAG 1 cut(s) 520
DpnI GATC 2 cut(s) 486, 621
DpnII GATC 2 cut(s) 484, 619
DraIII CACNNNGTG 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 159, 397, 409
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 2 cut(s) 136, 419
EcoO109I RGGNCCY 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 71, 77
FaiI YATR 4 cut(s) 69, 75, 233, 656
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 67, 73
FauI CCCGC 5 cut(s) 216, 343, 374, 399, 420
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 3 cut(s) 425, 445, 663
Fnu4HI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 7 cut(s) 131, 146, 200, 291, 324, 338, 340
GluI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
HaeII RGCGCY 2 cut(s) 133, 202
HaeIII GGCC 3 cut(s) 72, 245, 354
HapII CCGG 5 cut(s) 81, 106, 242, 395, 680
HgaI GACGC 2 cut(s) 247, 284
HhaI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 71, 77
Hin6I GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
HinP1I GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
HincII GTYRAC 3 cut(s) 426, 446, 664
HindII GTYRAC 3 cut(s) 426, 446, 664
HinfI GANTC 1 cut(s) 422
HpaII CCGG 5 cut(s) 81, 106, 242, 395, 680
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 4 cut(s) 363, 426, 446, 664
Hpy188I TCNGA 4 cut(s) 97, 482, 583, 709
Hpy188III TCNNGA 2 cut(s) 106, 623
Hpy8I GTNNAC 4 cut(s) 363, 426, 446, 664
Hpy99I CGWCG 5 cut(s) 53, 101, 278, 482, 668
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 345, 363, 718
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
HpyF3I CTNAG 1 cut(s) 520
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 71, 77
HspAI GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
KflI GGGWCCC 1 cut(s) 409
Kpn2I TCCGGA 1 cut(s) 105
KpnI GGTACC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 484, 619
LmnI GCTCC 4 cut(s) 98, 318, 512, 709
Lsp1109I GCAGC 4 cut(s) 119, 159, 390, 663
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 486, 621
MbiI CCGCTC 1 cut(s) 501
MboI GATC 2 cut(s) 484, 619
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 2 cut(s) 17, 584
MluI ACGCGT 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 120, 460
MnlI CCTC 6 cut(s) 529, 594, 619, 640, 651, 685
Mox20I TGGCCA 1 cut(s) 72
MroI TCCGGA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 72
MseI TTAA 1 cut(s) 614
MslI CAYNNNNRTG 2 cut(s) 72, 521
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 5 cut(s) 81, 106, 242, 395, 680
MspR9I CCNGG 2 cut(s) 242, 395
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
MwoI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
NciI CCSGG 2 cut(s) 242, 395
NcoI CCATGG 1 cut(s) 67
NdeII GATC 2 cut(s) 484, 619
NlaIII CATG 2 cut(s) 71, 77
NlaIV GGNNCC 6 cut(s) 14, 314, 410, 411, 505, 514
NsbI TGCGCA 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 521
PauI GCGCGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 300, 431
PctI GAATGC 1 cut(s) 147
PkrI GCNGC 7 cut(s) 134, 149, 185, 203, 229, 405, 678
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 6 cut(s) 14, 314, 410, 411, 505, 514
PspPI GGNCC 4 cut(s) 159, 352, 397, 409
PspPPI RGGWCCY 1 cut(s) 409
PteI GCGCGC 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 5 cut(s) 14, 59, 113, 287, 308
RsaNI GTAC 5 cut(s) 13, 58, 112, 286, 307
RseI CAYNNNNRTG 2 cut(s) 72, 521
SalI GTCGAC 3 cut(s) 424, 444, 662
SaqAI TTAA 1 cut(s) 614
SatI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
Sau3AI GATC 2 cut(s) 484, 619
Sau96I GGNCC 4 cut(s) 159, 352, 397, 409
ScaI AGTACT 2 cut(s) 59, 308
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 242, 395
SduI GDGCHC 1 cut(s) 365
SinI GGWCC 3 cut(s) 159, 397, 409
SmiMI CAYNNNNRTG 2 cut(s) 72, 521
Sse9I AATT 2 cut(s) 17, 584
StyD4I CCNGG 2 cut(s) 240, 393
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 540
TaiI ACGT 1 cut(s) 33
TaqI TCGA 5 cut(s) 51, 303, 425, 445, 663
TaqII GACCGA 1 cut(s) 176
TasI AATT 2 cut(s) 17, 584
TatI WGTACW 3 cut(s) 57, 111, 306
TauI GCSGC 3 cut(s) 186, 204, 230
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 1 cut(s) 528
TseI GCWGC 4 cut(s) 132, 147, 403, 676
TspRI CASTG 1 cut(s) 528
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 159, 397, 409
XapI RAATTY 1 cut(s) 584
XmiI GTMKAC 3 cut(s) 425, 445, 663
ZrmI AGTACT 2 cut(s) 59, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.