Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

62748494 .. 62751097

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGAGACCCGGCGCAACTTCTCGAGAAAGTTCGAAAAGAAAAAGAAAAATCATAGTGGGCGAATCTGTTTTGAGCTCGGTTGGACTCACTCGCCGGTCTTTCTTCTTTCTCCTCCTCCTCCTCCTCCTCCTTCCTCGAGAGACAGATTCGTACACAGAGAGAGAGAGAGAATGGAGGGCCAGCCGGCAGCTCTACTTAAATGCCAGCGAATCAGCTGCAACGCCACCTTTTCCGAAGACAACAATCCCGAAGGTTCTTGCCAATACCACGATGCGGGACCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCAGCTTATTTTTAGAATTAGAAGGATGCAAGACAGGTAAACACACAACAGAGAAACCTGTTTTGGCAAAGGCGAAACCTAAGACGCCTGTTTCTACGTCAGCTCCTGCATCTGATGCGTCTGCTAAACAATCCTGCTCTAGGTGCCAACAGGGTTTCTTCTGTTCAGAGCATGGTTCACAAGCCAAAGAAATGAATTCAAAGCCTGTAAATGTAGCCACAACGCCACTTACAGAAAGCATTACAAATGATCAAGGCACTTCTGCTCCACTGAAAAAGATTATTGACATAAACCAGCCCCAAATCTGCAAAAATAAAGGTTGTGGTCAAACTTTCAAAGAGAGGGATAACCATGAGACGGCATGCAATTACCACCCGGGGCCTGCTGTTTTCCATGACCGAGTGAGAGGGTGGAAGTGCTGTGACGTTCATGTAAAGGAATTTGACGAGTTTGTGAACATCCCTCCGTGTACCAAGGGGTGGCACAATGCTAACCCAGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

281

Amino Acids

31.52

Weight (kDa)

8.89

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	68 - 128	7.6e-23	CHORD
CHORD	PF04968	215 - 275	1.5e-23	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	819
AciI	CCGC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	535, 779
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	2 cut(s)	156, 811
AfiI	CCNNNNNNNGG	5 cut(s)	12, 277, 480, 697, 819
AgsI	TTSAA	2 cut(s)	540, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	5 cut(s)	79, 194, 219, 345, 443
AluI	AGCT	5 cut(s)	79, 194, 219, 345, 443
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	3 cut(s)	2, 138, 689
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	3 cut(s)	25, 139, 715
AoxI	GGCC	3 cut(s)	3, 181, 719
ApeKI	GCWGC	2 cut(s)	191, 219
ApoI	RAATTY	2 cut(s)	535, 779
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	181, 281, 719
AsuC2I	CCSGG	3 cut(s)	13, 716, 717
AsuII	TTCGAA	1 cut(s)	36
AvaI	CYCGRG	3 cut(s)	25, 139, 715
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	203, 206
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	3 cut(s)	13, 716, 717
BcoDI	GTCTC	3 cut(s)	2, 138, 689
BfaI	CTAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	192, 220
BlsI	GCNGC	2 cut(s)	193, 221
Bme1390I	CCNGG	3 cut(s)	13, 716, 717
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	3 cut(s)	25, 139, 715
BmgT120I	GGNCC	3 cut(s)	181, 281, 719
BmiI	GGNNCC	3 cut(s)	282, 485, 720
BmrFI	CCNGG	3 cut(s)	13, 716, 717
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	4 cut(s)	265, 356, 445, 458
BmuI	ACTGGG	1 cut(s)	830
BpiI	GAAGAC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	36
BpuMI	CCSGG	3 cut(s)	13, 716, 717
BsaHI	GRCGYC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	3 cut(s)	715, 716, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	427, 457, 589, 619
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 277, 480, 697, 819
Bse118I	RCCGGY	2 cut(s)	97, 187
Bse1I	ACTGG	2 cut(s)	836, 841
BseDI	CCNNGG	3 cut(s)	715, 716, 813
BseGI	GGATG	2 cut(s)	371, 798
BseLI	CCNNNNNNNGG	5 cut(s)	12, 277, 480, 697, 819
BseNI	ACTGG	2 cut(s)	836, 841
BseRI	GAGGAG	6 cut(s)	105, 108, 111, 114, 117, 120
BseXI	GCAGC	2 cut(s)	203, 206
BshFI	GGCC	3 cut(s)	5, 183, 721
BshNI	GGYRCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	3 cut(s)	25, 139, 715
BsiSI	CCGG	4 cut(s)	13, 98, 188, 716
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	5 cut(s)	12, 277, 480, 697, 819
BsmAI	GTCTC	3 cut(s)	2, 138, 689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	5, 183, 721
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	3 cut(s)	25, 139, 715
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	589
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	3 cut(s)	5, 183, 721
BspHI	TCATGA	2 cut(s)	292, 334
BspLI	GGNNCC	3 cut(s)	282, 485, 720
BspT104I	TTCGAA	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	2 cut(s)	97, 187
BsrI	ACTGG	2 cut(s)	836, 841
BssAI	RCCGGY	2 cut(s)	97, 187
BssECI	CCNNGG	3 cut(s)	715, 716, 813
BssMI	GATC	1 cut(s)	589
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	5 cut(s)	185, 189, 209, 703, 723
BstDEI	CTNAG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	2 cut(s)	371, 798
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	592
BstMAI	GTCTC	3 cut(s)	2, 138, 689
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 483
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	11, 714, 715
BstV1I	GCAGC	2 cut(s)	203, 206
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	5, 183, 721
BtsCI	GGATG	2 cut(s)	371, 798
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	5 cut(s)	185, 189, 209, 703, 723
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	2 cut(s)	292, 334
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	2 cut(s)	97, 187
Cfr13I	GGNCC	3 cut(s)	181, 281, 719
Cfr9I	CCCGGG	1 cut(s)	715
CseI	GACGC	2 cut(s)	433, 447
Csp6I	GTAC	2 cut(s)	155, 810
CviAII	CATG	7 cut(s)	293, 335, 512, 692, 702, 734, 770
CviQI	GTAC	2 cut(s)	155, 810
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	79
Eco88I	CYCGRG	3 cut(s)	25, 139, 715
EcoICRI	GAGCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoO109I	RGGNCCY	2 cut(s)	281, 719
EcoRI	GAATTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	813
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	7 cut(s)	296, 338, 515, 695, 705, 737, 773
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	7 cut(s)	292, 334, 511, 691, 701, 733, 769
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	192, 220
FokI	GGATG	2 cut(s)	378, 785
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	192, 220
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	192, 220
HaeIII	GGCC	3 cut(s)	5, 183, 721
HapII	CCGG	4 cut(s)	13, 98, 188, 716
HgaI	GACGC	2 cut(s)	433, 447
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	7 cut(s)	296, 338, 515, 695, 705, 737, 773
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	4 cut(s)	66, 88, 150, 213
HpaII	CCGG	4 cut(s)	13, 98, 188, 716
Hpy166II	GTNNAC	5 cut(s)	157, 380, 518, 796, 810
Hpy188I	TCNGA	3 cut(s)	238, 454, 508
Hpy188III	TCNNGA	6 cut(s)	25, 27, 141, 251, 293, 335
Hpy8I	GTNNAC	5 cut(s)	157, 380, 518, 796, 810
HpyAV	CCTTC	3 cut(s)	144, 248, 356
HpyCH4IV	ACGT	2 cut(s)	437, 765
HpyCH4V	TGCA	6 cut(s)	222, 321, 369, 449, 648, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 483
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	437, 765
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	7 cut(s)	296, 338, 515, 695, 705, 737, 773
HspAI	GCGC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	2 cut(s)	448, 610
Lsp1109I	GCAGC	2 cut(s)	203, 206
LweI	GCATC	4 cut(s)	265, 356, 445, 458
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	437, 765
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	3 cut(s)	98, 251, 490
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	356, 535, 706, 779
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	187
MseI	TTAA	2 cut(s)	201, 303
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	4 cut(s)	13, 98, 188, 716
MspR9I	CCNGG	3 cut(s)	13, 716, 717
MwoI	GCNNNNNNNGC	2 cut(s)	455, 483
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	3 cut(s)	13, 716, 717
NdeII	GATC	1 cut(s)	589
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	7 cut(s)	296, 338, 515, 695, 705, 737, 773
NlaIV	GGNNCC	3 cut(s)	282, 485, 720
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	705
PaeR7I	CTCGAG	2 cut(s)	25, 139
PagI	TCATGA	2 cut(s)	292, 334
PdiI	GCCGGC	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	66, 150, 213
PflMI	CCANNNNNTGG	1 cut(s)	819
PkrI	GCNGC	2 cut(s)	193, 221
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	282, 485, 720
PspPI	GGNCC	3 cut(s)	181, 281, 719
PspPPI	RGGWCCY	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	156, 811
RsaNI	GTAC	2 cut(s)	155, 810
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	201, 303
SatI	GCNGC	2 cut(s)	192, 220
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	3 cut(s)	181, 281, 719
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	3 cut(s)	13, 716, 717
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	4 cut(s)	265, 356, 445, 458
Sfr274I	CTCGAG	2 cut(s)	25, 139
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	1 cut(s)	281
SlaI	CTCGAG	2 cut(s)	25, 139
SmaI	CCCGGG	1 cut(s)	717
SmlI	CTYRAG	2 cut(s)	25, 139
SmoI	CTYRAG	2 cut(s)	25, 139
SphI	GCATGC	1 cut(s)	705
Sse9I	AATT	4 cut(s)	356, 535, 706, 779
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	11, 714, 715
StyI	CCWWGG	1 cut(s)	813
TaiI	ACGT	2 cut(s)	440, 768
TaqI	TCGA	3 cut(s)	26, 36, 140
TaqII	GACCGA	1 cut(s)	753
TasI	AATT	4 cut(s)	356, 535, 706, 779
TfiI	GAWTC	3 cut(s)	66, 150, 213
Tru1I	TTAA	2 cut(s)	201, 303
Tru9I	TTAA	2 cut(s)	201, 303
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	2 cut(s)	191, 219
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	281, 548, 758
TspGWI	ACGGA	1 cut(s)	795
TspMI	CCCGGG	1 cut(s)	715
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	819
VpaK11BI	GGWCC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	478
XapI	RAATTY	2 cut(s)	535, 779
XceI	RCATGY	1 cut(s)	705
XhoI	CTCGAG	2 cut(s)	25, 139
XmaI	CCCGGG	1 cut(s)	715
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.