RchiOBHm_Chr1g0379961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012931
Physical Location & Seq
Reverse (-)
65791226 .. 65793021
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGGACTACGATTACCGCAAAACCTCATCCTACGGCGCGCAGATCCCGCCCTACCGCCCCGCCTCGTCATCACAGCCGATGTACGGACCGCCACAGCCGTCGTCGTCGCTGTACCCCAGGGTCGGTCAACAACACGGTCAAGCGCCGGTTCCTACGCCGTCTCACGGCGGCGGAGGTCACCGTCCCGTCCCTCATCACCAGACCGCAACCACCTCAGCGCCTTCTTCTTCAGCGGGGTTGGGCATTCGAGTTATGATAAAGCCAGAGTATCGGATCACTCCTCCGCCTCAATTGTTGACGCAAGTCGGAGACATACCCCGAAGCAATTTCCAATTTGACTTTGATTTCGAGAGGAAAGTTTTGGCTGAAGCGCAGAAGGAAACCCCGAATTGGGGCAAGCTGGGGTTGGAAAACCTTCCACCACCTAAGGCTGTGGAGCCGCCGTCTTCTGCTTCCTCCTCCTCGGGTTCTATTGGTAACCCCGTCGTGAGGAAGTATGTCACTTCAGGGCTCAGCCAAGATGTGGTACCTCGGGCAGTTGCAACTTATGGTGACAATCCTGAGAAGGTTCGGGAATTTGTCCATGGGTTCAACGCTTTACATGAGATGGGGTTTCCTTCAGACAGTGTTGCCGATGCCCTTCTCATGTATGATAATGACAAGGAGAAAGCACTTGCCTATCTAATCAACAGTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.17

Weight (kDa)

7.07

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 526
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 523
AccII CGCG 1 cut(s) 38
AclWI GGATC 2 cut(s) 37, 281
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 4 cut(s) 213, 387, 489, 603
AfaI GTAC 3 cut(s) 83, 113, 528
AfiI CCNNNNNNNGG 8 cut(s) 83, 122, 164, 390, 391, 392, 489, 523
AgsI TTSAA 1 cut(s) 592
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 165, 303
AlwI GGATC 2 cut(s) 37, 281
Ama87I CYCGRG 2 cut(s) 463, 531
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 526
AspLEI GCGC 5 cut(s) 38, 40, 145, 220, 373
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 170, 188, 563
AvaI CYCGRG 2 cut(s) 463, 531
AvaII GGWCC 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 426
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 601
BceAI ACGGC 5 cut(s) 49, 82, 142, 181, 427
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 165, 303
BfoI RGCGCY 2 cut(s) 146, 221
BisI GCNGC 2 cut(s) 169, 440
BlpI GCTNAGC 1 cut(s) 512
BlsI GCNGC 2 cut(s) 170, 441
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 2 cut(s) 463, 531
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 150, 438, 528
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 625
BoxI GACNNNNGTC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 512
BsaJI CCNNGG 5 cut(s) 116, 117, 462, 530, 583
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 8 cut(s) 83, 122, 164, 390, 391, 392, 489, 523
Bse118I RCCGGY 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 5 cut(s) 116, 117, 462, 530, 583
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 8 cut(s) 83, 122, 164, 390, 391, 392, 489, 523
BseMII CTCAG 3 cut(s) 228, 526, 552
BsePI GCGCGC 1 cut(s) 36
BseRI GAGGAG 3 cut(s) 270, 448, 451
BseYI CCCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 526
BsiHKCI CYCGRG 2 cut(s) 463, 531
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 168, 173
BslI CCNNNNNNNGG 8 cut(s) 83, 122, 164, 390, 391, 392, 489, 523
BsmAI GTCTC 2 cut(s) 165, 303
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 168, 173
BsmI GAATGC 1 cut(s) 243
BsoBI CYCGRG 2 cut(s) 463, 531
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 42, 273
Bsp1720I GCTNAGC 1 cut(s) 512
Bsp19I CCATGG 1 cut(s) 583
BspCNI CTCAG 3 cut(s) 227, 525, 553
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 698
BspLI GGNNCC 3 cut(s) 150, 438, 528
BspPI GGATC 2 cut(s) 37, 281
BspT107I GGYRCC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 5 cut(s) 116, 117, 462, 530, 583
BssHII GCGCGC 1 cut(s) 36
BssMI GATC 2 cut(s) 42, 273
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 4 cut(s) 137, 182, 626, 692
BstC8I GCNNGC 2 cut(s) 38, 398
BstDEI CTNAG 4 cut(s) 214, 426, 512, 561
BstDSI CCRYGG 1 cut(s) 583
BstEII GGTNACC 2 cut(s) 176, 476
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 2 cut(s) 146, 221
BstHHI GCGC 5 cut(s) 38, 40, 145, 220, 373
BstKTI GATC 2 cut(s) 45, 276
BstMAI GTCTC 2 cut(s) 165, 303
BstMBI GATC 2 cut(s) 42, 273
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 302
BstPI GGTNACC 2 cut(s) 176, 476
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 38, 398
CciI TCATGA 1 cut(s) 698
CfoI GCGC 5 cut(s) 38, 40, 145, 220, 373
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 86
CpoI CGGWCCG 1 cut(s) 86
CseI GACGC 1 cut(s) 307
Csp6I GTAC 3 cut(s) 82, 112, 527
CspI CGGWCCG 1 cut(s) 86
CviAII CATG 4 cut(s) 584, 602, 646, 699
CviJI RGCY 9 cut(s) 76, 97, 262, 365, 400, 431, 439, 511, 516
CviKI_1 RGCY 9 cut(s) 76, 97, 262, 365, 400, 431, 439, 511, 516
CviQI GTAC 3 cut(s) 82, 112, 527
DdeI CTNAG 4 cut(s) 214, 426, 512, 561
DpnI GATC 2 cut(s) 44, 275
DpnII GATC 2 cut(s) 42, 273
EciI GGCGGA 2 cut(s) 186, 273
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 4 cut(s) 213, 387, 489, 603
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 463, 531
Eco91I GGTNACC 2 cut(s) 176, 476
EcoO65I GGTNACC 2 cut(s) 176, 476
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 583
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 4 cut(s) 587, 605, 649, 702
FaiI YATR 9 cut(s) 254, 314, 498, 549, 585, 603, 647, 651, 700
FaqI GGGAC 2 cut(s) 168, 173
FatI CATG 4 cut(s) 583, 601, 645, 698
FauI CCCGC 3 cut(s) 54, 67, 226
Fnu4HI GCNGC 2 cut(s) 169, 440
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 2 cut(s) 169, 440
GlaI GCGC 5 cut(s) 37, 39, 144, 219, 372
GluI GCNGC 2 cut(s) 169, 440
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 2 cut(s) 146, 221
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 307
HhaI GCGC 5 cut(s) 38, 40, 145, 220, 373
Hin1II CATG 4 cut(s) 587, 605, 649, 702
Hin6I GCGC 5 cut(s) 36, 38, 143, 218, 371
HinP1I GCGC 5 cut(s) 36, 38, 143, 218, 371
HincII GTYRAC 2 cut(s) 128, 297
HindII GTYRAC 2 cut(s) 128, 297
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 170, 188, 563
Hpy166II GTNNAC 2 cut(s) 128, 297
Hpy188I TCNGA 3 cut(s) 273, 308, 622
Hpy188III TCNNGA 5 cut(s) 349, 487, 560, 572, 699
Hpy8I GTNNAC 2 cut(s) 128, 297
Hpy99I CGWCG 4 cut(s) 103, 106, 109, 488
HpyAV CCTTC 6 cut(s) 231, 370, 425, 559, 627, 650
HpyCH4III ACNGT 4 cut(s) 137, 182, 626, 692
HpyCH4V TGCA 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 4 cut(s) 214, 426, 512, 561
Hsp92II CATG 4 cut(s) 587, 605, 649, 702
HspAI GCGC 5 cut(s) 36, 38, 143, 218, 371
KpnI GGTACC 1 cut(s) 530
Kzo9I GATC 2 cut(s) 42, 273
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 103, 130, 159, 212, 276, 386, 492, 573
LweI GCATC 1 cut(s) 625
MaeIII GTNAC 4 cut(s) 176, 476, 499, 551
MalI GATC 2 cut(s) 44, 275
MboI GATC 2 cut(s) 42, 273
MboII GAAGA 3 cut(s) 216, 219, 438
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 5 cut(s) 290, 325, 332, 388, 575
MmeI TCCRAC 2 cut(s) 286, 387
MroXI GAANNNNTTC 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 243
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 46
NcoI CCATGG 1 cut(s) 583
NdeII GATC 2 cut(s) 42, 273
NlaIII CATG 4 cut(s) 587, 605, 649, 702
NlaIV GGNNCC 3 cut(s) 150, 438, 528
NmuCI GTSAC 3 cut(s) 176, 499, 551
PagI TCATGA 1 cut(s) 698
PasI CCCWGGG 1 cut(s) 117
PauI GCGCGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 2 cut(s) 170, 441
PshAI GACNNNNGTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 2 cut(s) 176, 476
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 150, 438, 528
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 42
PteI GCGCGC 1 cut(s) 36
RsaI GTAC 3 cut(s) 83, 113, 528
RsaNI GTAC 3 cut(s) 82, 112, 527
Rsr2I CGGWCCG 1 cut(s) 86
RsrII CGGWCCG 1 cut(s) 86
SatI GCNGC 2 cut(s) 169, 440
Sau3AI GATC 2 cut(s) 42, 273
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 513
SetI ASST 8 cut(s) 26, 178, 215, 402, 417, 427, 532, 570
SfaNI GCATC 1 cut(s) 625
SinI GGWCC 1 cut(s) 86
Sse9I AATT 5 cut(s) 290, 325, 332, 388, 575
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 4 cut(s) 137, 182, 626, 692
TaqI TCGA 2 cut(s) 247, 348
TaqII GACCGA 1 cut(s) 113
TasI AATT 5 cut(s) 290, 325, 332, 388, 575
TauI GCSGC 2 cut(s) 171, 442
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 3 cut(s) 176, 499, 551
Tsp45I GTSAC 3 cut(s) 176, 499, 551
TspDTI ATGAA 1 cut(s) 684
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 631
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.