Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

66255770 .. 66259523

Gene Structure 3754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGCTGCTATTCTTCAAAGCCAGAAAAAACTCCGGGTTATGAGGACCCTACAGTTCTTGCTGCTGAAACACCTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTTTTCAGGAACCAGAATAAGAAGAATCTTTTTGCAGACAGGATTTTCGACTTATTTGATATCAAGCGCAATGGGGTTATTGATTTTGGAGAATTTGTTCGATCATTGGGTGTCTTTCACCCCAGTGCACCTGTAGAAGACAAAATTACATTTGCGTTTAGACTGTATGATCTGAGACAAACAGGGTTCATTGAACAAGAGGAGTTGAAGGAGATGGTGCTGGCACTTTTGCATGAATCAGATTTGTTACTTTCAAATGATGTCGTTGAAGCCATTGTGGATAAGACGTTTAAAGATGCAGATAAGAAAGGTGATGGAAGGATTGATCAGCAAGAGTGGAAGGAATTTGTTTTGAAGCATCCAACTTTGATCCTAAAAAATATGACTCTACCGTATCTAAAGGACATAACACTAGCTTTCCCTAGCTTTGTAATGAGTTCTGAAGTTGATGATTCAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.45

Weight (kDa)

4.77

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	105 - 175	9.5e-11	EF-hand domain pair
EF-hand_1	PF00036	152 - 176	1e-05	EF hand domain
EF-hand_5	PF13202	152 - 176	2.1e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	3 cut(s)	164, 269, 521
AcuI	CTGAAG	1 cut(s)	639
AfeI	AGCGCT	1 cut(s)	177
AgsI	TTSAA	8 cut(s)	18, 170, 371, 385, 432, 446, 532, 633
AleI	CACNNNNGTG	1 cut(s)	300
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	109, 593, 603
AluI	AGCT	3 cut(s)	109, 593, 603
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	541
Aor51HI	AGCGCT	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	6, 62
ApoI	RAATTY	3 cut(s)	164, 269, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	2 cut(s)	178, 246
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	287, 500
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	137, 385, 485
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	3 cut(s)	173, 590, 600
BfmI	CTRYAG	2 cut(s)	51, 309
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	2 cut(s)	7, 63
BlsI	GCNGC	2 cut(s)	8, 64
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	48, 188
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	463, 544
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	278, 346, 502, 546
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	48, 188
BspPI	GGATC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	278, 346, 502, 546
Bst4CI	ACNGT	4 cut(s)	55, 82, 342, 570
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 246
BstKTI	GATC	4 cut(s)	281, 349, 505, 549
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	4 cut(s)	278, 346, 502, 546
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	51, 309
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	2 cut(s)	178, 246
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	8 cut(s)	6, 22, 98, 109, 148, 449, 593, 603
CviKI_1	RGCY	8 cut(s)	6, 22, 98, 109, 148, 449, 593, 603
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	4 cut(s)	280, 348, 504, 548
DpnII	GATC	4 cut(s)	278, 346, 502, 546
DraI	TTTAAA	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	413
FaiI	YATR	9 cut(s)	42, 105, 134, 136, 138, 345, 411, 560, 584
FatI	CATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	7, 63
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	7, 63
FspBI	CTAG	3 cut(s)	173, 590, 600
GlaI	GCGC	2 cut(s)	177, 245
GluI	GCNGC	2 cut(s)	7, 63
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	2 cut(s)	178, 246
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	2 cut(s)	176, 244
HinP1I	GCGC	2 cut(s)	176, 244
HinfI	GANTC	4 cut(s)	202, 413, 562, 629
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	287, 500
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	351, 418, 619
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	379, 489, 511
HpyCH4III	ACNGT	4 cut(s)	55, 82, 342, 570
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	212, 305, 409, 476
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	2 cut(s)	176, 244
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	278, 346, 502, 546
LpnPI	CCDG	9 cut(s)	36, 48, 169, 202, 203, 313, 321, 345, 383
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	463, 544
MaeI	CTAG	3 cut(s)	173, 590, 600
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	4 cut(s)	280, 348, 504, 548
MboI	GATC	4 cut(s)	278, 346, 502, 546
MboII	GAAGA	4 cut(s)	6, 173, 211, 326
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	5 cut(s)	119, 164, 269, 321, 521
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	2 cut(s)	37, 370
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MseI	TTAA	2 cut(s)	114, 468
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	278, 346, 502, 546
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	2 cut(s)	48, 188
OliI	CACNNNNGTG	1 cut(s)	300
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PfeI	GAWTC	3 cut(s)	202, 413, 629
PkrI	GCNGC	2 cut(s)	8, 64
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	48, 188
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	114, 468
SatI	GCNGC	2 cut(s)	7, 63
Sau3AI	GATC	4 cut(s)	278, 346, 502, 546
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	76, 111, 310, 467, 490, 595, 605
SfaNI	GCATC	2 cut(s)	463, 544
SfcI	CTRYAG	2 cut(s)	51, 309
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	119, 164, 269, 321, 521
SspMI	CTAG	3 cut(s)	173, 590, 600
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	55, 82, 342, 570
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	225, 277
TasI	AATT	5 cut(s)	119, 164, 269, 321, 521
TfiI	GAWTC	3 cut(s)	202, 413, 629
Tru1I	TTAA	2 cut(s)	114, 468
Tru9I	TTAA	2 cut(s)	114, 468
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	6, 62
TspDTI	ATGAA	2 cut(s)	355, 426
TspRI	CASTG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	3 cut(s)	164, 269, 521
XmnI	GAANNNNTTC	2 cut(s)	165, 273
XspI	CTAG	3 cut(s)	173, 590, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.