Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016424

Physical Location & Seq

Genomic Coordinates Reverse (-)

67269503 .. 67273639

Gene Structure 4137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGTTTTAATTATAATTCTCGCTTCTCCAATTGTTTGGTTCGTCCCTTTTCCTCAAACTACTGTAGGATTGAGGGGTTGATAAGAAATCAAGCAATGTTGCCTCGGAGCCAAACTCAAACCGTGTGTCACCAAAGGCTTCAAGTGACCATCCTGATGATGAAAGAGGGACTGACAAGAGGAATGGTCTCTTTTTTGGTAGCTGAAAGGACGTCATCTTTTCACTTGGGATCTTCATCAAGTGTTTTCATGTTTCAGCGTGTGGCAATATCAACTGTTGCAAATATGTGCAAGAAACTTCCTTCAGATACAACTGACTTTGGGATGGAAGCTGTCCCATTATTGACAATCTTCTGCAATATCATGGTGTGTCCCAATGATAGGACTTGCAATGGGTCAGTGCGGTTGATTTCATGGATACATTGCACAAATTTGGGTGGTTATCTTACTCCTGGTACATGCTCGATTCAGGAATTGTTCCAGTTCCTAGGGAACCTGCCATATATATTACATGTGTACAACTTCAGACTTATAAGACCTGATACAAGGCTGTATGATGTTACCGGAAAGCCTATCAGCAACAGCAAATCTCCTCCTTTATACAACAAAGAATTCAAGTCAGTAGGTTTCGATGAAGTTTATGTAAATTCTTCCGGTACGATTCAAGTTAGTAGGTTAAGTCAGTTGACGACATTGCAAATTTTGTTCCTACTTACTGATCAATTGACTTATGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

246

Amino Acids

27.86

Weight (kDa)

9.06

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301
rosa_laevigata	RLG00000012245
rosa_multiflora	Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278250
rosa_samantha	Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 533
AatII	GACGTC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	504
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	4 cut(s)	430, 611, 646, 699
AcuI	CTGAAG	2 cut(s)	288, 508
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	3 cut(s)	457, 518, 658
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	143, 616, 665
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	2 cut(s)	203, 332
AluI	AGCT	2 cut(s)	203, 332
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	238
ApoI	RAATTY	4 cut(s)	430, 611, 646, 699
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspA2I	CCTAGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	487
BccI	CCATC	2 cut(s)	158, 319
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	411
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	411
BlnI	CCTAGG	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	110, 494
BmrFI	CCNGG	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BsaBI	GATNNNNATC	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	104, 487
BsaWI	WCCGGW	2 cut(s)	563, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	4 cut(s)	102, 397, 421, 692
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	104, 487
BseGI	GGATG	2 cut(s)	150, 330
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	4 cut(s)	102, 397, 421, 692
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	564, 654
BslFI	GGGAC	4 cut(s)	30, 183, 320, 357
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	4 cut(s)	30, 183, 320, 357
Bso31I	GGTCTC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	230, 718
BspACI	CCGC	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	110, 494
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	4 cut(s)	102, 397, 421, 692
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	104, 487
BssMI	GATC	2 cut(s)	230, 718
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	65, 124, 277
BstACI	GRCGYC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	150, 330
BstKTI	GATC	2 cut(s)	233, 721
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	230, 718
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	2 cut(s)	462, 515
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	150, 330
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	456, 517, 657
CviAII	CATG	5 cut(s)	250, 364, 414, 459, 512
CviJI	RGCY	6 cut(s)	111, 139, 203, 332, 550, 571
CviKI_1	RGCY	6 cut(s)	111, 139, 203, 332, 550, 571
CviQI	GTAC	3 cut(s)	456, 517, 657
DpnI	GATC	2 cut(s)	232, 720
DpnII	GATC	2 cut(s)	230, 718
Eco130I	CCWWGG	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	288, 508
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	5 cut(s)	253, 367, 417, 462, 515
FaqI	GGGAC	4 cut(s)	30, 183, 320, 357
FatI	CATG	5 cut(s)	249, 363, 413, 458, 511
FbaI	TGATCA	1 cut(s)	718
FokI	GGATG	2 cut(s)	137, 337
FspBI	CTAG	1 cut(s)	488
HapII	CCGG	2 cut(s)	564, 654
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	253, 367, 417, 462, 515
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	2 cut(s)	466, 661
HpaII	CCGG	2 cut(s)	564, 654
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	517, 687
Hpy188I	TCNGA	3 cut(s)	108, 307, 527
Hpy188III	TCNNGA	2 cut(s)	154, 470
Hpy8I	GTNNAC	2 cut(s)	517, 687
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	3 cut(s)	65, 124, 277
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	281, 291, 357, 390, 426, 697
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	253, 367, 417, 462, 515
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	2 cut(s)	230, 718
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	9 cut(s)	167, 438, 455, 465, 494, 509, 552, 577, 667
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	128, 145, 559
MalI	GATC	2 cut(s)	232, 720
MboI	GATC	2 cut(s)	230, 718
MboII	GAAGA	3 cut(s)	225, 343, 642
MfeI	CAATTG	2 cut(s)	31, 722
MflI	RGATCY	1 cut(s)	230
MnlI	CCTC	6 cut(s)	64, 67, 114, 160, 173, 603
MseI	TTAA	2 cut(s)	9, 677
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	2 cut(s)	564, 654
MspR9I	CCNGG	1 cut(s)	453
MunI	CAATTG	2 cut(s)	31, 722
MvaI	CCWGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	230, 718
NlaIII	CATG	5 cut(s)	253, 367, 417, 462, 515
NlaIV	GGNNCC	2 cut(s)	110, 494
NmuCI	GTSAC	2 cut(s)	128, 145
NspI	RCATGY	2 cut(s)	462, 515
PciI	ACATGT	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	466, 661
PscI	ACATGT	1 cut(s)	511
PsiI	TTATAA	2 cut(s)	15, 533
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	110, 494
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	3 cut(s)	457, 518, 658
RsaNI	GTAC	3 cut(s)	456, 517, 657
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	9, 677
Sau3AI	GATC	2 cut(s)	230, 718
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	7 cut(s)	205, 215, 334, 498, 541, 628, 677
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	155
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	65, 124, 277
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	464, 630
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	466, 661
Tru1I	TTAA	2 cut(s)	9, 677
Tru9I	TTAA	2 cut(s)	9, 677
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	128, 145
Tsp45I	GTSAC	2 cut(s)	128, 145
TspDTI	ATGAA	5 cut(s)	176, 225, 238, 402, 648
TspRI	CASTG	1 cut(s)	405
XapI	RAATTY	4 cut(s)	430, 611, 646, 699
XceI	RCATGY	2 cut(s)	462, 515
XmaJI	CCTAGG	1 cut(s)	487
XspI	CTAG	1 cut(s)	488
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.