Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016424

Physical Location & Seq

Genomic Coordinates Reverse (-)

67576884 .. 67584429

Gene Structure 7546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG457300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTGAACTAGTAGACAGTTCTGACCCTTGCAATCGTATTACAAGAAGTGTTCTTGCTGAGAAATCTCTCTTAACTATTTCATCAGACAACCAGAAATCAAGCATTGTTGCCTCGGAGCCAAACTCAAAGCGTGTGTCACCAAAGGCTTCAAGTGACCATCCTGATGATGAAAGAGGGACTGACAAGAGGAATGGTGTGAAGGCAAGGAACAACTCTTTTTTGGTAGCTGAAAGGACGTCATCTTTTCACTTGGGATCTTCATCAACTGTTTTCATGTTTCAGCGTGTGGCAATATCAACTGCTGCAAATATGTGCAAGAAACTTCTTTCAGATGCAACTGACTTTGGGATGGAAGCTGTCCCATTATTGACAATCTTCTGCAATATCATGAGACTAGGGCTAGGACTAGGGACTATGCCAGTGAAACATTTCCAAAAGAAGTACAAATGTCAAACTGGTGATGTTACCAATGAGCTTTACTTCAATGATTTAGACATAACAACCGGATCATCCAAAATTTGGGAAGTTTTATCAGTTATCTACAAGATACGAGATAGTTTGGATACAACAAGAGGAACATTTGCTAATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

199

Amino Acids

21.98

Weight (kDa)

8.33

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301
rosa_laevigata	RLG00000012245
rosa_multiflora	Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278250
rosa_samantha	Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	265, 517
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	8, 153, 487
AhlI	ACTAGT	1 cut(s)	10
AluBI	AGCT	3 cut(s)	230, 359, 478
AluI	AGCT	3 cut(s)	230, 359, 478
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	265, 517
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	519
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp700I	GAANNNNTTC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	132, 473
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	168, 346
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	4 cut(s)	11, 398, 404, 410
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BsaBI	GATNNNNATC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	422, 463
Bse8I	GATNNNNATC	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	160, 357, 512
BseJI	GATNNNNATC	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	422, 463
BseXI	GCAGC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	3 cut(s)	193, 347, 427
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	3 cut(s)	193, 347, 427
Bsp143I	GATC	2 cut(s)	257, 509
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	265, 517
BsrI	ACTGG	2 cut(s)	422, 463
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	257, 509
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	20, 271
BstACI	GRCGYC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	160, 357, 512
BstKTI	GATC	2 cut(s)	260, 512
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	257, 509
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	160, 357, 512
BtsIMutI	CAGTG	1 cut(s)	429
CciI	TCATGA	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	2 cut(s)	277, 391
CviJI	RGCY	6 cut(s)	121, 149, 230, 359, 403, 478
CviKI_1	RGCY	6 cut(s)	121, 149, 230, 359, 403, 478
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	259, 511
DpnII	GATC	2 cut(s)	257, 509
FaeI	CATG	2 cut(s)	280, 394
FaiI	YATR	5 cut(s)	278, 314, 392, 419, 500
FaqI	GGGAC	3 cut(s)	193, 347, 427
FatI	CATG	2 cut(s)	276, 390
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	3 cut(s)	147, 364, 499
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	4 cut(s)	11, 398, 404, 410
GluI	GCNGC	1 cut(s)	306
HapII	CCGG	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	280, 394
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	132, 473
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	25, 88, 118, 334
Hpy188III	TCNNGA	2 cut(s)	164, 391
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	20, 271
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	5 cut(s)	33, 308, 318, 338, 384
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	280, 394
Kzo9I	GATC	2 cut(s)	257, 509
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	107, 177, 435, 444, 520
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	4 cut(s)	11, 398, 404, 410
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	3 cut(s)	138, 155, 466
MalI	GATC	2 cut(s)	259, 511
MboI	GATC	2 cut(s)	257, 509
MboII	GAAGA	2 cut(s)	252, 370
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	2 cut(s)	519, 595
MnlI	CCTC	4 cut(s)	124, 170, 183, 569
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	257, 509
NlaIII	CATG	2 cut(s)	280, 394
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	138, 155
PagI	TCATGA	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	257, 509
SetI	ASST	4 cut(s)	232, 242, 361, 480
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	165
SpeI	ACTAGT	1 cut(s)	10
Sse9I	AATT	2 cut(s)	519, 595
SspMI	CTAG	4 cut(s)	11, 398, 404, 410
TaaI	ACNGT	2 cut(s)	20, 271
TaiI	ACGT	1 cut(s)	242
TasI	AATT	2 cut(s)	519, 595
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	138, 155
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	138, 155
TspDTI	ATGAA	4 cut(s)	72, 186, 252, 265
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	522
XapI	RAATTY	1 cut(s)	519
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	4 cut(s)	11, 398, 404, 410
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.