Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007558.1

Orthogroup ID

OG0016424

Physical Location & Seq

Genomic Coordinates Forward (+)

24682 .. 28648

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007558.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtgttttaattgtaattctcgcttctgcaattgtttggcttccaatgttgcctcggagccaaactcaaagcgtgtgtcaccaaaggcttcaagtgaccatcctgatgatgaaagagggactgacaagaggaatggtgtgaaggcaaggaacaactcttttttggtagctgaaaggacgtcatcttttcgcttgggatcttcatcaactgttttcatgtttcagcatgtggcaatatcaactgctgcaaatatatgcaagaaacttccttcagatgcaactgactttgggatggaagctgtcccattattgacaatcttctgcaatataatggtcccagtgataggacttgcaatgggatctcacttaaagtgggtcccacaggctcgtatccgggtttcggggtgtatgcttactcggaaaacttcacaaggtaaactcattcctttggattctgagatagaatgtacctgcaggtcgaatagtaagcaaacgaaggaaacgtgtttgccaattgacgacccaacggcgggttctacatcttcgcaaggagaggaggaccaagagaaatacacaccttcacattcagctgcgcattcggtgcacgaagatgaactgttcgaagaaccccccaaagttgagatggctgcagcaagaccactgaaggatgccttcgtcccaacaacgtctgaatctccttcatgcattgattatacaccggacgggaatcatgtctattccattcctgtgcagttgattaactcgttgcccaaatatatgggatccccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

263

Amino Acids

28.65

Weight (kDa)

6.17

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301
rosa_laevigata	RLG00000012245
rosa_multiflora	Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278250
rosa_samantha	Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	182
Acc16I	TGCGCA	1 cut(s)	594
Acc36I	ACCTGC	2 cut(s)	465, 479
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	4 cut(s)	205, 367, 777, 790
AcuI	CTGAAG	2 cut(s)	255, 683
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	4 cut(s)	344, 400, 529, 530
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	517, 549
AluBI	AGCT	3 cut(s)	170, 299, 590
AluI	AGCT	3 cut(s)	170, 299, 590
Alw21I	GWGCWC	1 cut(s)	606
Alw44I	GTGCAC	1 cut(s)	602
AlwI	GGATC	4 cut(s)	205, 367, 777, 790
ApaLI	GTGCAC	1 cut(s)	602
ApeKI	GCWGC	4 cut(s)	245, 590, 647, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	3 cut(s)	334, 376, 559
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	72
AsuII	TTCGAA	1 cut(s)	621
AvaII	GGWCC	3 cut(s)	334, 376, 559
BaeGI	GKGCMC	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	232, 577, 634, 662
BccI	CCATC	3 cut(s)	108, 286, 637
BceAI	ACGGC	1 cut(s)	543
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	472, 648
BfuAI	ACCTGC	2 cut(s)	465, 479
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	4 cut(s)	246, 591, 648, 651
BlsI	GCNGC	4 cut(s)	247, 592, 649, 652
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	3 cut(s)	334, 376, 559
BmgT120I	GGNCC	3 cut(s)	334, 376, 559
BmiI	GGNNCC	5 cut(s)	60, 336, 377, 378, 784
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	265, 658
BmuI	ACTGGG	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu14I	TTCGAA	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	4 cut(s)	344, 400, 529, 530
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	3 cut(s)	100, 297, 673
BseJI	GATNNNNATC	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	344, 400, 529, 530
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	232, 577, 634, 662
BsgI	GTGCAG	1 cut(s)	770
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	394, 719
BslFI	GGGAC	5 cut(s)	133, 287, 320, 362, 662
BslI	CCNNNNNNNGG	4 cut(s)	344, 400, 529, 530
BsmFI	GGGAC	5 cut(s)	133, 287, 320, 362, 662
BsmI	GAATGC	1 cut(s)	595
Bsp119I	TTCGAA	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	197, 359, 782
BspACI	CCGC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	5 cut(s)	60, 336, 377, 378, 784
BspMAI	CTGCAG	2 cut(s)	476, 652
BspMI	ACCTGC	2 cut(s)	465, 479
BspPI	GGATC	4 cut(s)	205, 367, 777, 790
BspT104I	TTCGAA	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	197, 359, 782
BssNI	GRCGYC	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	211, 618
BstACI	GRCGYC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	621
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	100, 297, 673
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	3 cut(s)	200, 362, 785
BstMBI	GATC	3 cut(s)	197, 359, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	472, 648
BstSLI	GKGCMC	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	232, 577, 634, 662
BstX2I	RGATCY	3 cut(s)	197, 359, 782
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	3 cut(s)	197, 359, 782
BsuI	GTATCC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	100, 297, 673
BtsIMutI	CAGTG	2 cut(s)	345, 659
BveI	ACCTGC	2 cut(s)	465, 479
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	3 cut(s)	334, 376, 559
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	4 cut(s)	217, 227, 702, 731
CviJI	RGCY	8 cut(s)	41, 61, 89, 170, 299, 386, 590, 647
CviKI_1	RGCY	8 cut(s)	41, 61, 89, 170, 299, 386, 590, 647
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	3 cut(s)	199, 361, 784
DpnII	GATC	3 cut(s)	197, 359, 782
Eco47I	GGWCC	3 cut(s)	334, 376, 559
Eco57I	CTGAAG	2 cut(s)	255, 683
EcoO109I	RGGNCCY	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	707
FaeI	CATG	4 cut(s)	220, 230, 705, 734
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	5 cut(s)	133, 287, 320, 362, 662
FatI	CATG	4 cut(s)	216, 226, 701, 730
FauI	CCCGC	1 cut(s)	523
Fnu4HI	GCNGC	4 cut(s)	246, 591, 648, 651
FokI	GGATG	3 cut(s)	87, 304, 680
Fsp4HI	GCNGC	4 cut(s)	246, 591, 648, 651
FspI	TGCGCA	1 cut(s)	594
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	4 cut(s)	246, 591, 648, 651
HapII	CCGG	2 cut(s)	394, 719
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	220, 230, 705, 734
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	3 cut(s)	452, 692, 727
HpaII	CCGG	2 cut(s)	394, 719
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	437, 604
Hpy188I	TCNGA	5 cut(s)	58, 274, 420, 457, 691
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	437, 604
HpyAV	CCTTC	7 cut(s)	136, 279, 490, 588, 658, 682, 708
HpyCH4III	ACNGT	2 cut(s)	211, 618
HpyCH4IV	ACGT	3 cut(s)	179, 503, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	3 cut(s)	179, 503, 686
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	220, 230, 705, 734
HspAI	GCGC	1 cut(s)	593
KflI	GGGWCCC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	197, 359, 782
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	117, 351, 368, 407, 460, 484, 732, 759
Lsp1109I	GCAGC	4 cut(s)	232, 577, 634, 662
LweI	GCATC	2 cut(s)	265, 658
MaeII	ACGT	3 cut(s)	179, 503, 686
MaeIII	GTNAC	2 cut(s)	78, 95
MalI	GATC	3 cut(s)	199, 361, 784
MboI	GATC	3 cut(s)	197, 359, 782
MboII	GAAGA	5 cut(s)	192, 310, 534, 620, 635
MfeI	CAATTG	2 cut(s)	31, 513
MflI	RGATCY	3 cut(s)	197, 359, 782
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	4 cut(s)	10, 16, 31, 513
MnlI	CCTC	5 cut(s)	64, 110, 123, 547, 550
Mph1103I	ATGCAT	1 cut(s)	707
MseI	TTAA	3 cut(s)	9, 368, 759
MslI	CAYNNNNRTG	3 cut(s)	105, 609, 746
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	2 cut(s)	394, 719
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	2 cut(s)	31, 513
Mva1269I	GAATGC	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	601
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	197, 359, 782
NlaIII	CATG	4 cut(s)	220, 230, 705, 734
NlaIV	GGNNCC	5 cut(s)	60, 336, 377, 378, 784
NmuCI	GTSAC	2 cut(s)	78, 95
NsbI	TGCGCA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	707
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	452, 692, 727
PkrI	GCNGC	4 cut(s)	247, 592, 649, 652
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	5 cut(s)	60, 336, 377, 378, 784
PspPI	GGNCC	3 cut(s)	334, 376, 559
PspPPI	RGGWCCY	1 cut(s)	376
PstI	CTGCAG	2 cut(s)	476, 652
PsuI	RGATCY	3 cut(s)	197, 359, 782
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	3 cut(s)	105, 609, 746
SaqAI	TTAA	3 cut(s)	9, 368, 759
SatI	GCNGC	4 cut(s)	246, 591, 648, 651
Sau3AI	GATC	3 cut(s)	197, 359, 782
Sau96I	GGNCC	3 cut(s)	334, 376, 559
SbfI	CCTGCAGG	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	395
SdaI	CCTGCAGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	265, 658
SfcI	CTRYAG	2 cut(s)	472, 648
SfuI	TTCGAA	1 cut(s)	621
SinI	GGWCC	3 cut(s)	334, 376, 559
SmiMI	CAYNNNNRTG	3 cut(s)	105, 609, 746
Sse8387I	CCTGCAGG	1 cut(s)	476
Sse9I	AATT	4 cut(s)	10, 16, 31, 513
SsiI	CCGC	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	211, 618
TaiI	ACGT	3 cut(s)	182, 506, 689
TaqI	TCGA	2 cut(s)	479, 621
TasI	AATT	4 cut(s)	10, 16, 31, 513
TfiI	GAWTC	3 cut(s)	452, 692, 727
Tru1I	TTAA	3 cut(s)	9, 368, 759
Tru9I	TTAA	3 cut(s)	9, 368, 759
TscAI	CASTG	2 cut(s)	345, 666
TseFI	GTSAC	2 cut(s)	78, 95
TseI	GCWGC	4 cut(s)	245, 590, 647, 650
Tsp45I	GTSAC	2 cut(s)	78, 95
TspDTI	ATGAA	5 cut(s)	126, 192, 205, 627, 690
TspRI	CASTG	2 cut(s)	345, 666
VneI	GTGCAC	1 cut(s)	602
VpaK11BI	GGWCC	3 cut(s)	334, 376, 559
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
ZraI	GACGTC	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.