Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301 |
| rosa_laevigata | RLG00000012245 |
| rosa_multiflora | Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278250 |
| rosa_samantha | Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 150 |
| AcsI | RAATTY | 4 cut(s) | 64, 245, 280, 333 |
| AcuI | CTGAAG | 1 cut(s) | 142 |
| AfaI | GTAC | 2 cut(s) | 91, 292 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AgsI | TTSAA | 3 cut(s) | 250, 299, 332 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| ApoI | RAATTY | 4 cut(s) | 64, 245, 280, 333 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| AspA2I | CCTAGG | 1 cut(s) | 121 |
| AvrII | CCTAGG | 1 cut(s) | 121 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BciVI | GTATCC | 1 cut(s) | 45 |
| BclI | TGATCA | 1 cut(s) | 352 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfuI | GTATCC | 1 cut(s) | 45 |
| BlnI | CCTAGG | 1 cut(s) | 121 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmiI | GGNNCC | 1 cut(s) | 128 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmrI | ACTGGG | 1 cut(s) | 3 |
| BmuI | ACTGGG | 1 cut(s) | 3 |
| BsaJI | CCNNGG | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 3 cut(s) | 9, 115, 202 |
| Bse3DI | GCAATG | 2 cut(s) | 31, 55 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 121 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseMI | GCAATG | 2 cut(s) | 31, 55 |
| BseNI | ACTGG | 3 cut(s) | 9, 115, 202 |
| BseRI | GAGGAG | 1 cut(s) | 216 |
| BsgI | GTGCAG | 1 cut(s) | 56 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bsp143I | GATC | 1 cut(s) | 352 |
| BspLI | GGNNCC | 1 cut(s) | 128 |
| BsrDI | GCAATG | 2 cut(s) | 31, 55 |
| BsrI | ACTGG | 3 cut(s) | 9, 115, 202 |
| BssECI | CCNNGG | 1 cut(s) | 121 |
| BssMI | GATC | 1 cut(s) | 352 |
| BssNAI | GTATAC | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 1 cut(s) | 121 |
| Bst1107I | GTATAC | 1 cut(s) | 151 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 1 cut(s) | 131 |
| BstKTI | GATC | 1 cut(s) | 355 |
| BstMBI | GATC | 1 cut(s) | 352 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstNSI | RCATGY | 2 cut(s) | 96, 149 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstZ17I | GTATAC | 1 cut(s) | 151 |
| BsuI | GTATCC | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 2 cut(s) | 16, 39 |
| Cac8I | GCNNGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 2 cut(s) | 90, 291 |
| CviAII | CATG | 4 cut(s) | 48, 93, 146, 365 |
| CviJI | RGCY | 3 cut(s) | 129, 184, 205 |
| CviKI_1 | RGCY | 3 cut(s) | 129, 184, 205 |
| CviQI | GTAC | 2 cut(s) | 90, 291 |
| DpnI | GATC | 1 cut(s) | 354 |
| DpnII | GATC | 1 cut(s) | 352 |
| Eco130I | CCWWGG | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 142 |
| EcoRI | GAATTC | 2 cut(s) | 245, 280 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 121 |
| FaeI | CATG | 4 cut(s) | 51, 96, 149, 368 |
| FatI | CATG | 4 cut(s) | 47, 92, 145, 364 |
| FbaI | TGATCA | 1 cut(s) | 352 |
| FblI | GTMKAC | 1 cut(s) | 150 |
| FspBI | CTAG | 1 cut(s) | 122 |
| Hin1II | CATG | 4 cut(s) | 51, 96, 149, 368 |
| HincII | GTYRAC | 1 cut(s) | 321 |
| HindII | GTYRAC | 1 cut(s) | 321 |
| HinfI | GANTC | 3 cut(s) | 100, 313, 361 |
| Hpy166II | GTNNAC | 2 cut(s) | 151, 321 |
| Hpy188I | TCNGA | 1 cut(s) | 161 |
| Hpy188III | TCNNGA | 1 cut(s) | 104 |
| Hpy8I | GTNNAC | 2 cut(s) | 151, 321 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 37, 60 |
| Hsp92II | CATG | 4 cut(s) | 51, 96, 149, 368 |
| Ksp22I | TGATCA | 1 cut(s) | 352 |
| Kzo9I | GATC | 1 cut(s) | 352 |
| LmnI | GCTCC | 1 cut(s) | 126 |
| LpnPI | CCDG | 8 cut(s) | 22, 72, 89, 99, 128, 143, 183, 186 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeIII | GTNAC | 1 cut(s) | 193 |
| MalI | GATC | 1 cut(s) | 354 |
| MboI | GATC | 1 cut(s) | 352 |
| MboII | GAAGA | 1 cut(s) | 331 |
| MfeI | CAATTG | 1 cut(s) | 356 |
| MluCI | AATT | 8 cut(s) | 64, 107, 245, 280, 294, 333, 356, 370 |
| MlyI | GAGTC | 2 cut(s) | 322, 355 |
| MnlI | CCTC | 1 cut(s) | 237 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MunI | CAATTG | 1 cut(s) | 356 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| NdeII | GATC | 1 cut(s) | 352 |
| NlaIII | CATG | 4 cut(s) | 51, 96, 149, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 128 |
| NspI | RCATGY | 2 cut(s) | 96, 149 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PfeI | GAWTC | 1 cut(s) | 100 |
| PleI | GAGTC | 2 cut(s) | 321, 355 |
| PpsI | GAGTC | 2 cut(s) | 321, 355 |
| PscI | ACATGT | 1 cut(s) | 145 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 1 cut(s) | 128 |
| RsaI | GTAC | 2 cut(s) | 91, 292 |
| RsaNI | GTAC | 2 cut(s) | 90, 291 |
| Sau3AI | GATC | 1 cut(s) | 352 |
| SchI | GAGTC | 2 cut(s) | 322, 355 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SetI | ASST | 3 cut(s) | 175, 262, 311 |
| Sse9I | AATT | 8 cut(s) | 64, 107, 245, 280, 294, 333, 356, 370 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| StyI | CCWWGG | 1 cut(s) | 121 |
| TaqI | TCGA | 2 cut(s) | 98, 264 |
| TasI | AATT | 8 cut(s) | 64, 107, 245, 280, 294, 333, 356, 370 |
| TfiI | GAWTC | 1 cut(s) | 100 |
| TscAI | CASTG | 2 cut(s) | 16, 39 |
| TspDTI | ATGAA | 2 cut(s) | 36, 282 |
| TspRI | CASTG | 2 cut(s) | 16, 39 |
| XapI | RAATTY | 4 cut(s) | 64, 245, 280, 333 |
| XceI | RCATGY | 2 cut(s) | 96, 149 |
| XmaJI | CCTAGG | 1 cut(s) | 121 |
| XmiI | GTMKAC | 1 cut(s) | 150 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |
| XspI | CTAG | 1 cut(s) | 122 |