Rh1AG456800

Serine arginine repetitive matrix protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
67496000 .. 67501636
5637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG456800.1

Sequence Viewer

Length: 339 bp
ATGATTGAACAAGTACACAGTTCCGAGTTTTGCGCTCGTATTGCAATAGAGGTTCTTGTTGAGAAATCTCTCTTAACTATTTCATCAGACAACCGGAAATCAAGCAATGTTGCCTCGGAGCCAAACTCAAAGCATGTGTCACCAAAGGCTTCAAGTGACCATCCTGATGATGAAAGAGGGACTGACAAGAGGAATGGTGTGAAGGCAAGGAACAACGCAGAATATCGGGACTCTGCATGTATGTTCCTCTATCAACTCCAACACAGATATCAGCTTCTTCCAGATGGTACGACAACTGGGATTGTTGAGAAAGCTTACCAACCCATAGCTCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.48

Weight (kDa)

6.41

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 15, 289
AgsI TTSAA 2 cut(s) 8, 153
AluBI AGCT 3 cut(s) 274, 314, 329
AluI AGCT 3 cut(s) 274, 314, 329
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 132
BccI CCATC 2 cut(s) 168, 278
BmiI GGNNCC 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuEI CTTGAG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 193, 242
BsmFI GGGAC 2 cut(s) 193, 242
BspLI GGNNCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 20
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 137, 240
BtsCI GGATG 1 cut(s) 160
CfoI GCGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 14, 288
CviAII CATG 2 cut(s) 134, 237
CviJI RGCY 5 cut(s) 121, 149, 274, 314, 329
CviKI_1 RGCY 5 cut(s) 121, 149, 274, 314, 329
CviQI GTAC 2 cut(s) 14, 288
Eco32I GATATC 1 cut(s) 269
EcoRV GATATC 1 cut(s) 269
FaeI CATG 2 cut(s) 137, 240
FaiI YATR 4 cut(s) 135, 238, 242, 326
FaqI GGGAC 2 cut(s) 193, 242
FatI CATG 2 cut(s) 133, 236
FokI GGATG 1 cut(s) 147
GlaI GCGC 1 cut(s) 34
HapII CCGG 1 cut(s) 94
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 137, 240
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 25, 88, 118
Hpy188III TCNNGA 3 cut(s) 164, 227, 281
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 44, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 137, 240
HspAI GCGC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 107, 177, 282, 294
MaeIII GTNAC 2 cut(s) 138, 155
MboII GAAGA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 5 cut(s) 43, 124, 170, 183, 257
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 137, 240
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 138, 155
NspI RCATGY 2 cut(s) 137, 240
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 120
RsaI GTAC 2 cut(s) 15, 289
RsaNI GTAC 2 cut(s) 14, 288
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 74
SchI GAGTC 1 cut(s) 224
SetI ASST 4 cut(s) 54, 276, 316, 331
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 20
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseFI GTSAC 2 cut(s) 138, 155
Tsp45I GTSAC 2 cut(s) 138, 155
TspDTI ATGAA 2 cut(s) 72, 186
XceI RCATGY 2 cut(s) 137, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.