Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016424

Physical Location & Seq

Genomic Coordinates Forward (+)

1328330 .. 1334466

Gene Structure 6137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTGTTCTCTATTCTAAAGCATGGGAGCCGTGCGAACAGTAGCACCCCAAGTGATTTGACCATTTTGCCCTTGGTCTGTGCTTTGACTATTTTGCCCCTGGATGATTATAATTTGGCGCAGAGAGGGAGAGGGGTTGATAAGAAATCAAGCAATGTTGCCTCGGAGCCAAACTCAAAGCGTGTGTCACCAAAGGCTTCAAGTGACCATCCTGATGATGAAAGAGGGACTGACAAGACGAATGGTGTGAAGGCAAGGAACAACTCTTTTTTGGTATCTGAAAGGACGTCATCTTTTCACTTGGGATCTTCATCAACTGTTTTCATGTTTCAGCGTGTGGCAATATCAACAGCTGCAAATATGTGCAAGAAACTTCCTTCAGAGACAACTGACTTTGGGATGGAAGCTGTCCCATTATTGACAATCTTCTGCAATATCATGGACTTGCAATGGGTCAGTGCAGTTGATTTCATGGATACATTGCACAAATTTGGGTGGTTATCTTACTCCTGGTACACGCTCGATTCAGGAATTGTTCCAGTTCCTAACTTCCTATGGAACCTGCCATATATATTACATGTATACAACTTCAGACTTATAAGACCTGATACAAGGCTGTATGATGTTACTGGAAAGCCTATCAGCAACAGCAAATCTCCTCCTTTATACAACAAAGAATTCAAGTCACTCAAGGATGAAGCTGTTATTCTGATCAGAAGTAATGGCTTGTCAGATGTGAAACTCCTGAGTTTGGAAAGATCATTTCATGTCCAGTTCCGGGGGAACTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

264

Amino Acids

29.63

Weight (kDa)

9.05

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301
rosa_laevigata	RLG00000012245
rosa_multiflora	Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278250
rosa_samantha	Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	111, 599
AatII	GACGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	582
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	488, 677
AcuI	CTGAAG	2 cut(s)	363, 574
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	751, 778
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	201, 682
AjnI	CCWGG	2 cut(s)	99, 509
AluBI	AGCT	3 cut(s)	353, 407, 701
AluI	AGCT	3 cut(s)	353, 407, 701
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	488, 677
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	216, 394
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	101, 511
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	101, 511, 779
BmiI	GGNNCC	3 cut(s)	29, 168, 560
BmrFI	CCNGG	3 cut(s)	101, 511, 779
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	72, 99, 162, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	751, 778
Bse1I	ACTGG	3 cut(s)	539, 634, 772
Bse3DI	GCAATG	3 cut(s)	160, 455, 479
Bse8I	GATNNNNATC	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	101, 511
BseDI	CCNNGG	4 cut(s)	72, 99, 162, 778
BseGI	GGATG	4 cut(s)	109, 208, 405, 700
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	751, 778
BseMI	GCAATG	3 cut(s)	160, 455, 479
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	3 cut(s)	539, 634, 772
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	2 cut(s)	241, 395
BslI	CCNNNNNNNGG	2 cut(s)	751, 778
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	241, 395
Bsp143I	GATC	3 cut(s)	305, 711, 758
BspCNI	CTCAG	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	29, 168, 560
BspMI	ACCTGC	1 cut(s)	570
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	3 cut(s)	160, 455, 479
BsrI	ACTGG	3 cut(s)	539, 634, 772
BssECI	CCNNGG	4 cut(s)	72, 99, 162, 778
BssMI	GATC	3 cut(s)	305, 711, 758
BssNAI	GTATAC	1 cut(s)	583
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	101, 511
Bst4CI	ACNGT	2 cut(s)	41, 319
BstACI	GRCGYC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	746
BstF5I	GGATG	4 cut(s)	109, 208, 405, 700
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	308, 714, 761
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	305, 711, 758
BstNI	CCWGG	2 cut(s)	101, 511
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	3 cut(s)	99, 509, 777
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BstZ17I	GTATAC	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	469
BtsCI	GGATG	4 cut(s)	109, 208, 405, 700
BtsIMutI	CAGTG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	570
CfoI	GCGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	6 cut(s)	23, 325, 439, 472, 578, 767
CviJI	RGCY	9 cut(s)	30, 169, 197, 353, 407, 616, 637, 701, 726
CviKI_1	RGCY	9 cut(s)	30, 169, 197, 353, 407, 616, 637, 701, 726
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	746
DpnI	GATC	3 cut(s)	307, 713, 760
DpnII	GATC	3 cut(s)	305, 711, 758
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	363, 574
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	99, 509
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	6 cut(s)	26, 328, 442, 475, 581, 770
FaqI	GGGAC	2 cut(s)	241, 395
FatI	CATG	6 cut(s)	22, 324, 438, 471, 577, 766
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	4 cut(s)	116, 195, 412, 707
Fsp4HI	GCNGC	1 cut(s)	354
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	354
HapII	CCGG	1 cut(s)	778
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	6 cut(s)	26, 328, 442, 475, 581, 770
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	2 cut(s)	516, 583
Hpy188I	TCNGA	7 cut(s)	166, 280, 382, 593, 711, 716, 733
Hpy188III	TCNNGA	3 cut(s)	212, 528, 745
Hpy8I	GTNNAC	2 cut(s)	516, 583
HpyAV	CCTTC	2 cut(s)	244, 387
HpyCH4III	ACNGT	2 cut(s)	41, 319
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	6 cut(s)	356, 366, 432, 448, 461, 484
HpyF3I	CTNAG	1 cut(s)	746
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	6 cut(s)	26, 328, 442, 475, 581, 770
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	305, 711, 758
LmnI	GCTCC	2 cut(s)	27, 166
Lsp1109I	GCAGC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	186, 203, 625, 684
MalI	GATC	3 cut(s)	307, 713, 760
MboI	GATC	3 cut(s)	305, 711, 758
MboII	GAAGA	2 cut(s)	300, 418
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	4 cut(s)	112, 488, 531, 677
MnlI	CCTC	5 cut(s)	119, 125, 172, 218, 669
MseI	TTAA	1 cut(s)	793
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	3 cut(s)	101, 511, 779
MvaI	CCWGG	2 cut(s)	101, 511
NciI	CCSGG	1 cut(s)	779
NdeII	GATC	3 cut(s)	305, 711, 758
NlaIII	CATG	6 cut(s)	26, 328, 442, 475, 581, 770
NlaIV	GGNNCC	3 cut(s)	29, 168, 560
NmuCI	GTSAC	3 cut(s)	186, 203, 684
NspI	RCATGY	1 cut(s)	581
PciI	ACATGT	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	577
PsiI	TTATAA	2 cut(s)	111, 599
Psp6I	CCWGG	2 cut(s)	99, 509
PspGI	CCWGG	2 cut(s)	99, 509
PspN4I	GGNNCC	3 cut(s)	29, 168, 560
PsuI	RGATCY	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	793
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	305, 711, 758
ScrFI	CCNGG	3 cut(s)	101, 511, 779
SetI	ASST	6 cut(s)	290, 355, 409, 564, 607, 703
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	4 cut(s)	112, 488, 531, 677
StyD4I	CCNGG	3 cut(s)	99, 509, 777
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	41, 319
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	112, 488, 531, 677
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	1 cut(s)	793
Tru9I	TTAA	1 cut(s)	793
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	186, 203, 684
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	3 cut(s)	186, 203, 684
TspDTI	ATGAA	6 cut(s)	234, 300, 313, 460, 711, 755
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	488, 677
XceI	RCATGY	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	582
ZraI	GACGTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.