Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0016424

Physical Location & Seq

Genomic Coordinates Reverse (-)

174632 .. 175241

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgagctggtgctcttatggcagcgctttctttcttctccacaggagtccacttaatccatctaattattacttattattttgcagctcttttttggtagctgaaaggacgtcatcttttcgcttgggatcttcatcaactgttttcatgtttcagcatgtggcaatatcaactgctgcaaatatatgcaagaaacttccttcacatgcaactgactttgggatggaagctgtcccattattgacaatcttctgcaatataatggtcccagtgataggacttgcaatgggtcagtgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

8.36

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301
rosa_laevigata	RLG00000012245
rosa_multiflora	Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278250
rosa_samantha	Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	110
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	275
AluBI	AGCT	4 cut(s)	6, 87, 101, 230
AluI	AGCT	4 cut(s)	6, 87, 101, 230
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	136
Aor51HI	AGCGCT	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	21, 84, 176
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	33, 96, 163
BccI	CCATC	2 cut(s)	67, 217
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	3 cut(s)	22, 85, 177
BlsI	GCNGC	3 cut(s)	23, 86, 178
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	133
BseGI	GGATG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	33, 96, 163
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	218, 251
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	218, 251
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	161, 209
BstV1I	GCAGC	3 cut(s)	33, 96, 163
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	276, 299
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	3 cut(s)	148, 158, 206
CviJI	RGCY	4 cut(s)	6, 87, 101, 230
CviKI_1	RGCY	4 cut(s)	6, 87, 101, 230
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	25
FaeI	CATG	3 cut(s)	151, 161, 209
FaiI	YATR	7 cut(s)	18, 149, 159, 185, 187, 207, 260
FaqI	GGGAC	2 cut(s)	218, 251
FatI	CATG	3 cut(s)	147, 157, 205
Fnu4HI	GCNGC	3 cut(s)	22, 85, 177
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	22, 85, 177
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	22, 85, 177
HaeII	RGCGCY	1 cut(s)	27
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	151, 161, 209
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	7 cut(s)	84, 179, 189, 209, 255, 284, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	151, 161, 209
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	128
LpnPI	CCDG	2 cut(s)	28, 282
Lsp1109I	GCAGC	3 cut(s)	33, 96, 163
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	26, 123, 241
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	151, 161, 209
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	2 cut(s)	161, 209
PkrI	GCNGC	3 cut(s)	23, 86, 178
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	22, 85, 177
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	5 cut(s)	8, 89, 103, 113, 232
SgeI	CNNG	9 cut(s)	19, 55, 136, 160, 170, 202, 218, 281, 293
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	113
TasI	AATT	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	276, 299
TseI	GCWGC	3 cut(s)	21, 84, 176
TspDTI	ATGAA	2 cut(s)	123, 136
TspRI	CASTG	2 cut(s)	276, 299
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	2 cut(s)	161, 209
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.