E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0382171 RchiOBHm_Chr1g0382181 RchiOBHm_Chr1g0382301 |
| rosa_laevigata | RLG00000012245 |
| rosa_multiflora | Rmu_sc0000110.1_g000036 Rmu_sc0007558.1_g000004 Rmu_sc0038879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278250 |
| rosa_samantha | Rh1AG456700 Rh1AG456800 Rh1AG456900 Rh1AG457300 Rh1AG458000 Rh1AG458100 Rh1BG413700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 259 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AcyI | GRCGYC | 1 cut(s) | 233 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 398 |
| AgsI | TTSAA | 1 cut(s) | 147 |
| AjiI | CACGTC | 1 cut(s) | 33 |
| AluBI | AGCT | 2 cut(s) | 224, 353 |
| AluI | AGCT | 2 cut(s) | 224, 353 |
| AlwI | GGATC | 1 cut(s) | 259 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| AspS9I | GGNCC | 1 cut(s) | 388 |
| AsuHPI | GGTGA | 1 cut(s) | 126 |
| AvaII | GGWCC | 1 cut(s) | 388 |
| BccI | CCATC | 3 cut(s) | 162, 244, 340 |
| BfmI | CTRYAG | 1 cut(s) | 73 |
| Bme18I | GGWCC | 1 cut(s) | 388 |
| BmgBI | CACGTC | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 1 cut(s) | 388 |
| BmiI | GGNNCC | 2 cut(s) | 114, 390 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BsaBI | GATNNNNATC | 1 cut(s) | 256 |
| BsaHI | GRCGYC | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 1 cut(s) | 108 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 1 cut(s) | 106 |
| Bse8I | GATNNNNATC | 1 cut(s) | 256 |
| BseDI | CCNNGG | 1 cut(s) | 108 |
| BseGI | GGATG | 2 cut(s) | 154, 351 |
| BseJI | GATNNNNATC | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseMI | GCAATG | 1 cut(s) | 106 |
| BslFI | GGGAC | 4 cut(s) | 39, 187, 341, 374 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BsmFI | GGGAC | 4 cut(s) | 39, 187, 341, 374 |
| Bsp143I | GATC | 1 cut(s) | 251 |
| BspLI | GGNNCC | 2 cut(s) | 114, 390 |
| BspPI | GGATC | 1 cut(s) | 259 |
| BsrDI | GCAATG | 1 cut(s) | 106 |
| BssECI | CCNNGG | 1 cut(s) | 108 |
| BssMI | GATC | 1 cut(s) | 251 |
| BssNI | GRCGYC | 1 cut(s) | 233 |
| Bst4CI | ACNGT | 4 cut(s) | 7, 74, 265, 298 |
| BstACI | GRCGYC | 1 cut(s) | 233 |
| BstDEI | CTNAG | 1 cut(s) | 87 |
| BstF5I | GGATG | 2 cut(s) | 154, 351 |
| BstKTI | GATC | 1 cut(s) | 254 |
| BstMBI | GATC | 1 cut(s) | 251 |
| BstSFI | CTRYAG | 1 cut(s) | 73 |
| BtrI | CACGTC | 1 cut(s) | 33 |
| BtsCI | GGATG | 2 cut(s) | 154, 351 |
| BtsIMutI | CAGTG | 1 cut(s) | 422 |
| Cfr13I | GGNCC | 1 cut(s) | 388 |
| CseI | GACGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CviAII | CATG | 2 cut(s) | 271, 385 |
| CviJI | RGCY | 4 cut(s) | 115, 143, 224, 353 |
| CviKI_1 | RGCY | 4 cut(s) | 115, 143, 224, 353 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DdeI | CTNAG | 1 cut(s) | 87 |
| DpnI | GATC | 1 cut(s) | 253 |
| DpnII | GATC | 1 cut(s) | 251 |
| Eco47I | GGWCC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 274, 388 |
| FaiI | YATR | 5 cut(s) | 23, 25, 272, 308, 386 |
| FaqI | GGGAC | 4 cut(s) | 39, 187, 341, 374 |
| FatI | CATG | 2 cut(s) | 270, 384 |
| FokI | GGATG | 2 cut(s) | 141, 358 |
| HgaI | GACGC | 1 cut(s) | 241 |
| Hin1I | GRCGYC | 1 cut(s) | 233 |
| Hin1II | CATG | 2 cut(s) | 274, 388 |
| HphI | GGTGA | 1 cut(s) | 126 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 328 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| HpyAV | CCTTC | 2 cut(s) | 190, 333 |
| HpyCH4III | ACNGT | 4 cut(s) | 7, 74, 265, 298 |
| HpyCH4IV | ACGT | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 6 cut(s) | 38, 302, 312, 332, 378, 420 |
| HpyF3I | CTNAG | 1 cut(s) | 87 |
| HpySE526I | ACGT | 1 cut(s) | 32 |
| Hsp92I | GRCGYC | 1 cut(s) | 233 |
| Hsp92II | CATG | 2 cut(s) | 274, 388 |
| Kzo9I | GATC | 1 cut(s) | 251 |
| LmnI | GCTCC | 1 cut(s) | 112 |
| LpnPI | CCDG | 1 cut(s) | 171 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeII | ACGT | 1 cut(s) | 32 |
| MaeIII | GTNAC | 2 cut(s) | 132, 149 |
| MalI | GATC | 1 cut(s) | 253 |
| MboI | GATC | 1 cut(s) | 251 |
| MboII | GAAGA | 1 cut(s) | 364 |
| MfeI | CAATTG | 1 cut(s) | 39 |
| MluCI | AATT | 2 cut(s) | 39, 186 |
| MnlI | CCTC | 3 cut(s) | 73, 118, 164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 159 |
| MunI | CAATTG | 1 cut(s) | 39 |
| NdeII | GATC | 1 cut(s) | 251 |
| NlaIII | CATG | 2 cut(s) | 274, 388 |
| NlaIV | GGNNCC | 2 cut(s) | 114, 390 |
| NmuCI | GTSAC | 2 cut(s) | 132, 149 |
| PspN4I | GGNNCC | 2 cut(s) | 114, 390 |
| PspPI | GGNCC | 1 cut(s) | 388 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 1 cut(s) | 159 |
| Sau3AI | GATC | 1 cut(s) | 251 |
| Sau96I | GGNCC | 1 cut(s) | 388 |
| SetI | ASST | 3 cut(s) | 35, 226, 355 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfcI | CTRYAG | 1 cut(s) | 73 |
| SinI | GGWCC | 1 cut(s) | 388 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 159 |
| Sse9I | AATT | 2 cut(s) | 39, 186 |
| TaaI | ACNGT | 4 cut(s) | 7, 74, 265, 298 |
| TaiI | ACGT | 1 cut(s) | 35 |
| TasI | AATT | 2 cut(s) | 39, 186 |
| TscAI | CASTG | 1 cut(s) | 422 |
| TseFI | GTSAC | 2 cut(s) | 132, 149 |
| Tsp45I | GTSAC | 2 cut(s) | 132, 149 |
| TspDTI | ATGAA | 2 cut(s) | 180, 259 |
| TspRI | CASTG | 1 cut(s) | 422 |
| VpaK11BI | GGWCC | 1 cut(s) | 388 |