RchiOBHm_Chr1g0322761

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017769
Physical Location & Seq
Reverse (-)
10147735 .. 10148158
424 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55274

Sequence Viewer

Length: 273 bp
ATGACAAAGAGGTGGTGGCCTACTTTGGGTGATCGGACAAAGCTAAATTGCTTACAGACTTGCGTTGCTAGTGCAACAATTACTGAGAGGATCATGAAGGCTCTTAAAGACTATGATGAAGATGAAATCCCACCTGAAAGTGTCCATCGCTATGTTCTTTATGAATGCCGCAAGTGGAATCTTGTTTGGGTAGGAAAGAAAAAGGTGGCCTCACTTGAGCTTGATGAAGTTGAAATGCTTTTGGGTTCTCAAGGGACCACACAAGGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

90

Amino Acids

10.43

Weight (kDa)

5.85

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 26, 264
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 2 cut(s) 43, 220
AluI AGCT 2 cut(s) 43, 220
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 17, 207
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 255
BccI CCATC 1 cut(s) 153
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 234, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 264
BseLI CCNNNNNNNGG 2 cut(s) 26, 264
BseMII CTCAG 1 cut(s) 75
BshFI GGCC 2 cut(s) 19, 209
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 26, 264
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 2 cut(s) 19, 209
Bsp143I GATC 2 cut(s) 31, 90
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 19, 209
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 98
BssMI GATC 2 cut(s) 31, 90
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 2 cut(s) 34, 93
BstMBI GATC 2 cut(s) 31, 90
BsuRI GGCC 2 cut(s) 19, 209
BtgZI GCGATG 1 cut(s) 131
CciI TCATGA 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 19, 43, 101, 209, 220
CviKI_1 RGCY 5 cut(s) 19, 43, 101, 209, 220
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 33, 92
DpnII GATC 2 cut(s) 31, 90
Eco47I GGWCC 1 cut(s) 255
FaeI CATG 1 cut(s) 97
FaiI YATR 4 cut(s) 95, 114, 153, 162
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 19, 209
Hin1II CATG 1 cut(s) 97
HinfI GANTC 1 cut(s) 178
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 2 cut(s) 31, 90
LpnPI CCDG 1 cut(s) 147
MaeI CTAG 1 cut(s) 69
MalI GATC 2 cut(s) 33, 92
MboI GATC 2 cut(s) 31, 90
MboII GAAGA 1 cut(s) 131
MluCI AATT 2 cut(s) 46, 78
MnlI CCTC 3 cut(s) 3, 81, 220
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 170
NdeII GATC 2 cut(s) 31, 90
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 256
PagI TCATGA 1 cut(s) 93
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 31, 90
Sau96I GGNCC 1 cut(s) 255
SetI ASST 5 cut(s) 14, 45, 136, 207, 222
SgeI CNNG 9 cut(s) 72, 81, 106, 146, 184, 194, 227, 233, 263
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 215, 249
SmoI CTYRAG 2 cut(s) 215, 249
Sse9I AATT 2 cut(s) 46, 78
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 69
TasI AATT 2 cut(s) 46, 78
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TspDTI ATGAA 5 cut(s) 110, 132, 138, 177, 240
VpaK11BI GGWCC 1 cut(s) 255
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.