Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003743.1

Orthogroup ID

OG0017769

Physical Location & Seq

Genomic Coordinates Reverse (-)

161362 .. 163556

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003743.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ctgcattctcctcaagaacagcagcaaattgactcagatctcttttcttcagattatgatgggagctttctggatggttttttagatctcaatggctctgatgatgaggtaaccattgatcctacatctgaggcggggacgaaacgtctgtccttggttaaaatggggtacaatgaattggagacttcaacggcaatagaaagatgcggtactgactcgtcacttgttgatttgactgatttcatatcagctgctcaaatttcaaaggcagaagctgcccatcttccccttgaagagatggtcttatttgtccttcttgctgatattcaatatttcctctcgttttcttccatctcaaactacattttttgtattacccatgagaggtggtggcctacgtgggatggtcggagaaagctaaattgcttacagacttgcattgctagtgcaacaattactgagagggtcaggaaggctcttaatgactatgacgaagatgaaatcccaccagaaagtgtctgtcgctatgtacttcatgaatgccgcaagtggaatcttgtttgggtaggaaagaaaaaggtggccccacttgagcctgatgaagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

4.48

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017769)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321591 RchiOBHm_Chr1g0322361 RchiOBHm_Chr1g0322621 RchiOBHm_Chr1g0322761
rosa_laevigata	RLG00000030383
rosa_multiflora	Rmu_sc0001168.1_g000011 Rmu_sc0003743.1_g000034
rosa_samantha	Rh1AG051500 Rh1AG052500 Rh1AG052700 Rh1AG053400 Rh1BG029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	134, 207, 544
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	3 cut(s)	170, 211, 531
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	4 cut(s)	189, 264, 293, 329
AhdI	GACNNNNNGTC	1 cut(s)	144
AluBI	AGCT	4 cut(s)	66, 251, 275, 418
AluI	AGCT	4 cut(s)	66, 251, 275, 418
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	392, 582
ApeKI	GCWGC	3 cut(s)	22, 251, 275
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspS9I	GGNCC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	34, 238, 262
BccI	CCATC	6 cut(s)	53, 68, 288, 292, 359, 398
BceAI	ACGGC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	444
BglII	AGATCT	2 cut(s)	37, 85
BisI	GCNGC	4 cut(s)	23, 252, 276, 544
BlsI	GCNGC	4 cut(s)	24, 253, 277, 545
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	1 cut(s)	585
BmsI	GCATC	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	79, 409
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	3 cut(s)	48, 120, 450
BseXI	GCAGC	3 cut(s)	34, 238, 262
BshFI	GGCC	2 cut(s)	394, 584
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	4, 545
BsnI	GGCC	2 cut(s)	394, 584
Bsp143I	GATC	3 cut(s)	37, 85, 118
BspACI	CCGC	3 cut(s)	134, 207, 544
BspANI	GGCC	2 cut(s)	394, 584
BspCNI	CTCAG	3 cut(s)	47, 121, 451
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	37, 85, 118
BssT1I	CCWWGG	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	34, 129, 459
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	79, 409
BstKTI	GATC	3 cut(s)	40, 88, 121
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	37, 85, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	34, 238, 262
BstX2I	RGATCY	2 cut(s)	37, 85
BstYI	RGATCY	2 cut(s)	37, 85
BsuRI	GGCC	2 cut(s)	394, 584
BtsCI	GGATG	2 cut(s)	79, 409
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	169, 210, 530
CviAII	CATG	2 cut(s)	380, 536
CviJI	RGCY	9 cut(s)	66, 96, 251, 275, 394, 418, 476, 584, 595
CviKI_1	RGCY	9 cut(s)	66, 96, 251, 275, 394, 418, 476, 584, 595
CviQI	GTAC	3 cut(s)	169, 210, 530
DdeI	CTNAG	3 cut(s)	34, 129, 459
DpnI	GATC	3 cut(s)	39, 87, 120
DpnII	GATC	3 cut(s)	37, 85, 118
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	383, 539
FaiI	YATR	7 cut(s)	57, 245, 381, 489, 528, 537, 607
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	379, 535
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	23, 252, 276, 544
FokI	GGATG	2 cut(s)	86, 416
Fsp4HI	GCNGC	4 cut(s)	23, 252, 276, 544
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	4 cut(s)	23, 252, 276, 544
HaeIII	GGCC	2 cut(s)	394, 584
Hin1II	CATG	2 cut(s)	383, 539
HinfI	GANTC	3 cut(s)	32, 215, 553
Hpy188I	TCNGA	5 cut(s)	37, 52, 100, 130, 411
Hpy188III	TCNNGA	4 cut(s)	14, 71, 469, 536
HpyAV	CCTTC	2 cut(s)	323, 466
HpyCH4IV	ACGT	2 cut(s)	145, 398
HpyCH4V	TGCA	3 cut(s)	4, 438, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	34, 129, 459
HpySE526I	ACGT	2 cut(s)	145, 398
Hsp92II	CATG	2 cut(s)	383, 539
Kzo9I	GATC	3 cut(s)	37, 85, 118
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	56, 454, 522
Lsp1109I	GCAGC	3 cut(s)	34, 238, 262
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	145, 398
MaeIII	GTNAC	2 cut(s)	109, 219
MalI	GATC	3 cut(s)	39, 87, 120
MboI	GATC	3 cut(s)	37, 85, 118
MboII	GAAGA	5 cut(s)	39, 275, 305, 339, 506
MflI	RGATCY	2 cut(s)	37, 85
MluCI	AATT	5 cut(s)	27, 176, 258, 421, 453
MlyI	GAGTC	2 cut(s)	26, 209
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	21, 100, 124, 347, 378, 456
MseI	TTAA	2 cut(s)	159, 480
MspA1I	CMGCKG	1 cut(s)	251
Mva1269I	GAATGC	2 cut(s)	4, 545
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	37, 85, 118
NlaIII	CATG	2 cut(s)	383, 539
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	219
PagI	TCATGA	1 cut(s)	535
PctI	GAATGC	2 cut(s)	4, 545
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	24, 253, 277, 545
PleI	GAGTC	2 cut(s)	26, 209
PpsI	GAGTC	2 cut(s)	26, 209
Ppu21I	YACGTR	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	37, 85
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	170, 211, 531
RsaNI	GTAC	3 cut(s)	169, 210, 530
SaqAI	TTAA	2 cut(s)	159, 480
SatI	GCNGC	4 cut(s)	23, 252, 276, 544
Sau3AI	GATC	3 cut(s)	37, 85, 118
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	2 cut(s)	26, 209
SetI	ASST	9 cut(s)	68, 111, 148, 253, 277, 389, 401, 420, 582
SfaNI	GCATC	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	12, 590
SmoI	CTYRAG	2 cut(s)	12, 590
Sse9I	AATT	5 cut(s)	27, 176, 258, 421, 453
SsiI	CCGC	3 cut(s)	134, 207, 544
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	153
TaiI	ACGT	2 cut(s)	148, 401
TasI	AATT	5 cut(s)	27, 176, 258, 421, 453
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	159, 480
Tru9I	TTAA	2 cut(s)	159, 480
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	3 cut(s)	22, 251, 275
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	5 cut(s)	189, 232, 513, 524, 552
XapI	RAATTY	1 cut(s)	258
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.