Rh1AG053400

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017769
Physical Location & Seq
Reverse (-)
8890348 .. 8892171
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG053400.1

Sequence Viewer

Length: 381 bp
ATGAGTGGAATTAAGGCTCTTGAAAGTAGTCCTCCGGAGCAATGTCCTCTGCCAGAGCTACATTCTCCTCCAGAACAGTGCTCTCCTCAAGAACAGCAACAAATTGACCCGGATCTCTTTTCTTCAGATTATGATGGGAGCTTTCTAGATAGTTTTTCAGATCTCGATAGCTCTGATGATGAGGCAACCATCGATCCTACATCTGAGGTCGAGACAAAACTTATATCCTTGGTTAAAATGGGGTACAATGAATTGGAGGCTTCAATGGCAATAGAAAGATGCGGTATTGACTCGTCCCTTGTTGATTCGACTGATTTCATCTCAGCTGCTCAAATTTCAAAGGCAGAAGATGGCCATCTTCCCCTTGAAGAGATGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_methylase

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

4.05

Isoelectric Point (pI)

67.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 120, 188
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 4 cut(s) 23, 264, 339, 368
AluBI AGCT 4 cut(s) 58, 141, 171, 326
AluI AGCT 4 cut(s) 58, 141, 171, 326
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 120, 188
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 110
BalI TGGCCA 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 313
BccI CCATC 5 cut(s) 128, 197, 344, 363, 367
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 34
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 195, 336
BseRI GAGGAG 2 cut(s) 57, 75
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 35, 110
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 112, 160, 193
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 196, 335
BspDI ATCGAT 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 34
BspPI GGATC 2 cut(s) 120, 188
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 112, 160, 193
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 204, 322
BstKTI GATC 3 cut(s) 115, 163, 196
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 112, 160, 193
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 2 cut(s) 112, 160
BstYI RGATCY 2 cut(s) 112, 160
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 83
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 244
CviJI RGCY 7 cut(s) 17, 58, 141, 171, 260, 326, 354
CviKI_1 RGCY 7 cut(s) 17, 58, 141, 171, 260, 326, 354
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 204, 322
DpnI GATC 3 cut(s) 114, 162, 195
DpnII GATC 3 cut(s) 112, 160, 193
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaiI YATR 2 cut(s) 132, 224
FaqI GGGAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 35, 110
HinfI GANTC 2 cut(s) 290, 305
HpaII CCGG 2 cut(s) 35, 110
Hpy188I TCNGA 4 cut(s) 127, 160, 175, 205
Hpy188III TCNNGA 7 cut(s) 20, 35, 71, 89, 146, 164, 211
HpyCH4III ACNGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 204, 322
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 112, 160, 193
LmnI GCTCC 2 cut(s) 37, 138
LpnPI CCDG 4 cut(s) 48, 66, 84, 123
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 269
MaeI CTAG 1 cut(s) 146
MalI GATC 3 cut(s) 114, 162, 195
MboI GATC 3 cut(s) 112, 160, 193
MboII GAAGA 4 cut(s) 114, 350, 359, 380
MflI RGATCY 2 cut(s) 112, 160
MhlI GDGCHC 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 4 cut(s) 9, 102, 251, 333
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 7 cut(s) 42, 57, 78, 96, 175, 199, 250
Mox20I TGGCCA 1 cut(s) 354
MroI TCCGGA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 12, 234
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 35, 110
MspR9I CCNGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 110
NdeII GATC 3 cut(s) 112, 160, 193
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PsuI RGATCY 2 cut(s) 112, 160
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 12, 234
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 112, 160, 193
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 60, 143, 173, 210, 328
SfaNI GCATC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 4 cut(s) 9, 102, 251, 333
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 165, 192, 210, 308
TasI AATT 4 cut(s) 9, 102, 251, 333
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 12, 234
Tru9I TTAA 2 cut(s) 12, 234
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 264, 307
TspRI CASTG 1 cut(s) 83
XapI RAATTY 1 cut(s) 333
XbaI TCTAGA 1 cut(s) 145
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.