Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001168.1

Orthogroup ID

OG0017769

Physical Location & Seq

Genomic Coordinates Reverse (-)

48886 .. 50927

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001168.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggaattttctcataatatggttgccaaagccatccaagaacatggtttgcaggaatatccaggacttgaagatgcagattcaattcttgaaaccctcctcttatataacgctcttgaaaattatgatgggaactttctggatcgttttttagatctcgatagctctgatgatgaggtaaccatcaatcctacatctgatgtggagacaaaacttatgtccttggttaaaatgggaattcatctcgttcctcttccaccactaactatatttgatgcatttcccctgacaaggaggtggtggcctacttgggatgatcagacaaagctaaattgcttacagacttgcattgctagtgcaacaattactgagagggtcggcaaggctcttaaagactatgacgaagatgaaatccgaccggaaagtgtctgtcgctgtgttctttgtgaatgccgcaagtggaatcttgttgatgaagtagctagaaatgcttttggggttcctaagggaccgcacaaggggaatacgcaggacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

179

Amino Acids

20.4

Weight (kDa)

4.63

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017769)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321591 RchiOBHm_Chr1g0322361 RchiOBHm_Chr1g0322621 RchiOBHm_Chr1g0322761
rosa_laevigata	RLG00000030383
rosa_multiflora	Rmu_sc0001168.1_g000011 Rmu_sc0003743.1_g000034
rosa_samantha	Rh1AG051500 Rh1AG052500 Rh1AG052700 Rh1AG053400 Rh1BG029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	454, 512
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	5, 237
AfiI	CCNNNNNNNGG	2 cut(s)	291, 518
AgsI	TTSAA	4 cut(s)	71, 84, 92, 119
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	3 cut(s)	165, 328, 482
AluI	AGCT	3 cut(s)	165, 328, 482
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	5, 237
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	504
BccI	CCATC	3 cut(s)	41, 122, 191
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	354, 483
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	501, 510
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	64, 265
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 518
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	33, 319
BseLI	CCNNNNNNNGG	2 cut(s)	291, 518
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	304
BsiEI	CGRYCG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	291, 518
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	522
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	142, 154, 316
BspACI	CCGC	2 cut(s)	454, 512
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	501, 510
BspPI	GGATC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	142, 154, 316
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	369, 504
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	33, 319
BstKTI	GATC	3 cut(s)	145, 157, 319
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	142, 154, 316
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	33, 319
Cfr13I	GGNCC	1 cut(s)	509
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	32, 165, 304, 328, 386, 482
CviKI_1	RGCY	6 cut(s)	32, 165, 304, 328, 386, 482
DdeI	CTNAG	2 cut(s)	369, 504
DpnI	GATC	3 cut(s)	144, 156, 318
DpnII	GATC	3 cut(s)	142, 154, 316
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	509
Eco81I	CCTNAGG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	47
FaiI	YATR	9 cut(s)	15, 20, 45, 106, 108, 126, 218, 269, 399
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	20, 326
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	354, 483
GluI	GCNGC	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	1 cut(s)	47
HinfI	GANTC	2 cut(s)	80, 463
HpaII	CCGG	1 cut(s)	419
Hpy188I	TCNGA	4 cut(s)	169, 199, 321, 416
Hpy188III	TCNNGA	4 cut(s)	89, 116, 140, 158
HpyCH4V	TGCA	5 cut(s)	52, 77, 278, 348, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	369, 504
Hsp92II	CATG	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	142, 154, 316
LpnPI	CCDG	7 cut(s)	38, 48, 75, 125, 299, 432, 515
LweI	GCATC	2 cut(s)	64, 265
MaeI	CTAG	2 cut(s)	354, 483
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	144, 156, 318
MboI	GATC	3 cut(s)	142, 154, 316
MboII	GAAGA	3 cut(s)	83, 245, 416
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	6 cut(s)	5, 84, 121, 237, 331, 363
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	107, 110, 169, 261, 288, 366
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	2 cut(s)	228, 390
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	3 cut(s)	142, 154, 316
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	501, 510
NsiI	ATGCAT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	80, 463
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	501, 510
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	228, 390
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	3 cut(s)	142, 154, 316
Sau96I	GGNCC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	5 cut(s)	167, 180, 299, 330, 484
SfaNI	GCATC	2 cut(s)	64, 265
SinI	GGWCC	1 cut(s)	509
Sse9I	AATT	6 cut(s)	5, 84, 121, 237, 331, 363
SsiI	CCGC	2 cut(s)	454, 512
SspMI	CTAG	2 cut(s)	354, 483
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	159
TasI	AATT	6 cut(s)	5, 84, 121, 237, 331, 363
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	80, 463
Tru1I	TTAA	2 cut(s)	228, 390
Tru9I	TTAA	2 cut(s)	228, 390
TspDTI	ATGAA	3 cut(s)	230, 423, 489
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	2 cut(s)	5, 237
XspI	CTAG	2 cut(s)	354, 483
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.