RchiOBHm_Chr1g0343771
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
36075320 .. 36078322
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57028

Sequence Viewer

Length: 1197 bp
ATGTTTTGCATCATACTAGCAATATCTCCAGCCAACCAAGATATCGCTACATCTGATGCTATCAAACTTGCACGGAAAGTGGATCCAGCAGGTGAACGAACGTTTGGGGTGATGACAAAGCTTGATTGGATGGACAAAGGAACTAACGCTTTGGATGTTATTGAAGGAAGATCTTATCGCCTACAACAGCCTTGGGTTGGAGTTGTGAACCGTTCCCAAGCAGATATTAATAAAAATACGGACATGATTGTCGCAAGGCGCAAGGAACGTGAGTACTTTGCAACCAGTCCTGACTATGGGCACTTGGCTAATAGAATGGGTTCAGAGTACCTTGCTAAACTTCTGTCACAGCACTTGGAGTCTGTAATTAGGGCTCGTATCCCAAGTATCACATCCTTGATTAACAAAAGCATTGATGAACTTGAATCCGAGATGGACCATCTTGGTAGGCCTATAGCCGTTGACGCTGGGGCTCAATTATACACTATACTGGAACTTTGCCGTGCATTTGACCGAATATTTAAAGAGCACTTAGATGGAGGGCGACCCGGAGGTGATAGGATTTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAAGCTTCCATTTGATCGACATCTGTCCATGCAGAATGTAAAGAAAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTGATTGCCCCAGAGCAAGGTTACCGCCGCCTTATTGAGGGATCACTGAATTACTTTAGAGGTCCAGCTGAGGCTTCCTGTGGATGCTGTAAGTATTCATTTTTGGTCCACTTTGTCTTGAAAGAACTTGTGAGAAAGTCATTAGCAGAAACTCAGGAATTAAGACGGTTTCTGACTCTGCAAGCTGAAATAGCGGGTGCAGCTAATGAAGCATTGGAAAGGTTCCGTGATGAGAGTAAGAAGTCAACTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGGAATTCTTTCGAAGACTTCCACAGGAAGTGGAGAAACCAGTTGGCCCAGGAGGAAAACCAGGACACCCGGGAGGAAATCCAGCTGCCAATGCTGCTATAGACCGTTATTCGGAGGGTCACTTTTGGAGGATAGGATCGAACGCACTACTACAAAAACTGCATCACACAACGGTGGAAATCTGTTGTGTGATGTGGACCATGTCTGTCGTCTATCTCGATGTTGTGTGA

Protein Analysis

398

Amino Acids

44.74

Weight (kDa)

7.64

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 3 - 41 1.2e-07 Dynamin family
Dynamin_M PF01031 49 - 322 2.8e-58 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 3 cut(s) 706, 709, 875
AclI AACGTT 1 cut(s) 101
AclWI GGATC 4 cut(s) 77, 90, 730, 1111
AcsI RAATTY 1 cut(s) 971
AfaI GTAC 2 cut(s) 275, 329
AfiI CCNNNNNNNGG 5 cut(s) 197, 296, 698, 718, 1078
AgsI TTSAA 3 cut(s) 164, 425, 802
AjnI CCWGG 2 cut(s) 1015, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AleI CACNNNNGTG 1 cut(s) 1139
AluBI AGCT 7 cut(s) 121, 586, 607, 749, 866, 884, 1052
AluI AGCT 7 cut(s) 121, 586, 607, 749, 866, 884, 1052
Alw21I GWGCWC 1 cut(s) 531
AlwI GGATC 4 cut(s) 77, 90, 730, 1111
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 1036
AoxI GGCC 2 cut(s) 449, 1012
ApeKI GCWGC 5 cut(s) 586, 593, 881, 1052, 1061
ApoI RAATTY 1 cut(s) 971
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 319, 975
AspLEI GCGC 2 cut(s) 261, 936
AspS9I GGNCC 5 cut(s) 436, 743, 787, 1013, 1164
AsuC2I CCSGG 3 cut(s) 549, 1037, 1038
AsuHPI GGTGA 3 cut(s) 104, 121, 566
AsuII TTCGAA 1 cut(s) 979
AvaI CYCGRG 1 cut(s) 1036
AvaII GGWCC 4 cut(s) 436, 743, 787, 1164
BaeGI GKGCMC 1 cut(s) 303
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 376, 475
BbsI GAAGAC 1 cut(s) 988
Bbv12I GWGCWC 1 cut(s) 531
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 573, 580, 893, 1039, 1048
BccI CCATC 5 cut(s) 124, 427, 447, 530, 659
BceAI ACGGC 2 cut(s) 443, 486
BciT130I CCWGG 2 cut(s) 1017, 1029
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 3 cut(s) 549, 1037, 1038
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 2 cut(s) 453, 1065
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 389
BglII AGATCT 1 cut(s) 170
BisI GCNGC 6 cut(s) 587, 594, 709, 882, 1053, 1062
BlsI GCNGC 6 cut(s) 588, 595, 710, 883, 1054, 1063
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 5 cut(s) 549, 1017, 1029, 1037, 1038
Bme18I GGWCC 4 cut(s) 436, 743, 787, 1164
BmeT110I CYCGRG 1 cut(s) 1036
BmgT120I GGNCC 5 cut(s) 436, 743, 787, 1013, 1164
BmiI GGNNCC 2 cut(s) 84, 905
BmrFI CCNGG 5 cut(s) 549, 1017, 1029, 1037, 1038
BmsI GCATC 4 cut(s) 18, 46, 755, 1138
BoxI GACNNNNGTC 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 750
Bpu14I TTCGAA 1 cut(s) 979
BpuMI CCSGG 3 cut(s) 549, 1037, 1038
BsaBI GATNNNNATC 2 cut(s) 621, 669
BsaJI CCNNGG 3 cut(s) 191, 1015, 1036
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 296, 698, 718, 1078
Bse1I ACTGG 3 cut(s) 285, 495, 1007
Bse8I GATNNNNATC 2 cut(s) 621, 669
BseBI CCWGG 2 cut(s) 1017, 1029
BseDI CCNNGG 3 cut(s) 191, 1015, 1036
BseGI GGATG 4 cut(s) 135, 160, 392, 770
BseJI GATNNNNATC 2 cut(s) 621, 669
BseLI CCNNNNNNNGG 5 cut(s) 197, 296, 698, 718, 1078
BseMII CTCAG 2 cut(s) 741, 848
BseNI ACTGG 3 cut(s) 285, 495, 1007
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 5 cut(s) 573, 580, 893, 1039, 1048
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 900
BshFI GGCC 2 cut(s) 451, 1014
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 549, 1037
BslI CCNNNNNNNGG 5 cut(s) 197, 296, 698, 718, 1078
BsnI GGCC 2 cut(s) 451, 1014
BsoBI CYCGRG 1 cut(s) 1036
Bsp119I TTCGAA 1 cut(s) 979
Bsp1286I GDGCHC 4 cut(s) 303, 376, 475, 531
Bsp143I GATC 5 cut(s) 82, 170, 616, 722, 1103
BspACI CCGC 3 cut(s) 706, 709, 875
BspANI GGCC 2 cut(s) 451, 1014
BspCNI CTCAG 2 cut(s) 742, 847
BspLI GGNNCC 2 cut(s) 84, 905
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 4 cut(s) 77, 90, 730, 1111
BspT104I TTCGAA 1 cut(s) 979
BsrI ACTGG 3 cut(s) 285, 495, 1007
BssECI CCNNGG 3 cut(s) 191, 1015, 1036
BssMI GATC 5 cut(s) 82, 170, 616, 722, 1103
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 2 cut(s) 1017, 1029
Bst4CI ACNGT 5 cut(s) 212, 849, 967, 1073, 1141
BstBI TTCGAA 1 cut(s) 979
BstC8I GCNNGC 2 cut(s) 591, 864
BstDEI CTNAG 4 cut(s) 532, 750, 834, 937
BstEII GGTNACC 1 cut(s) 701
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 4 cut(s) 135, 160, 392, 770
BstHHI GCGC 2 cut(s) 261, 936
BstKTI GATC 5 cut(s) 85, 173, 619, 725, 1106
BstMBI GATC 5 cut(s) 82, 170, 616, 722, 1103
BstMWI GCNNNNNNNGC 6 cut(s) 464, 872, 881, 890, 1058, 1061
BstNI CCWGG 2 cut(s) 1017, 1029
BstPAI GACNNNNGTC 1 cut(s) 625
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 5 cut(s) 547, 1015, 1027, 1035, 1036
BstSFI CTRYAG 2 cut(s) 453, 1065
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 5 cut(s) 573, 580, 893, 1039, 1048
BstV2I GAAGAC 1 cut(s) 988
BstX2I RGATCY 2 cut(s) 82, 170
BstYI RGATCY 2 cut(s) 82, 170
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 451, 1014
BtsCI GGATG 4 cut(s) 135, 160, 392, 770
BtsIMutI CAGTG 1 cut(s) 725
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 591, 864
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 2 cut(s) 261, 936
Cfr13I GGNCC 5 cut(s) 436, 743, 787, 1013, 1164
Cfr9I CCCGGG 1 cut(s) 1036
CseI GACGC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 274, 328
CviAII CATG 4 cut(s) 244, 631, 946, 1168
CviQI GTAC 2 cut(s) 274, 328
DdeI CTNAG 4 cut(s) 532, 750, 834, 937
DpnI GATC 5 cut(s) 84, 172, 618, 724, 1105
DpnII GATC 5 cut(s) 82, 170, 616, 722, 1103
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 451
Eco24I GRGCYC 2 cut(s) 376, 475
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 4 cut(s) 436, 743, 787, 1164
Eco88I CYCGRG 1 cut(s) 1036
Eco91I GGTNACC 1 cut(s) 701
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 1015, 1027
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 376, 475
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 4 cut(s) 247, 634, 949, 1171
FatI CATG 4 cut(s) 243, 630, 945, 1167
FauI CCCGC 1 cut(s) 868
Fnu4HI GCNGC 6 cut(s) 587, 594, 709, 882, 1053, 1062
FokI GGATG 4 cut(s) 142, 167, 379, 777
FriOI GRGCYC 2 cut(s) 376, 475
Fsp4HI GCNGC 6 cut(s) 587, 594, 709, 882, 1053, 1062
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 260, 935
GluI GCNGC 6 cut(s) 587, 594, 709, 882, 1053, 1062
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 2 cut(s) 451, 1014
HapII CCGG 2 cut(s) 549, 1037
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 261, 936
Hin1II CATG 4 cut(s) 247, 634, 949, 1171
Hin6I GCGC 2 cut(s) 259, 934
HinP1I GCGC 2 cut(s) 259, 934
HincII GTYRAC 2 cut(s) 463, 927
HindII GTYRAC 2 cut(s) 463, 927
HindIII AAGCTT 2 cut(s) 119, 605
HinfI GANTC 4 cut(s) 359, 425, 856, 950
HpaII CCGG 2 cut(s) 549, 1037
HphI GGTGA 3 cut(s) 104, 121, 566
Hpy166II GTNNAC 7 cut(s) 95, 208, 463, 790, 927, 943, 1164
Hpy188I TCNGA 6 cut(s) 55, 325, 430, 658, 855, 1081
Hpy188III TCNNGA 4 cut(s) 290, 799, 836, 1184
Hpy8I GTNNAC 7 cut(s) 95, 208, 463, 790, 927, 943, 1164
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 5 cut(s) 212, 849, 967, 1073, 1141
HpyCH4IV ACGT 2 cut(s) 101, 268
HpyCH4V TGCA 8 cut(s) 9, 71, 281, 506, 634, 862, 881, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 464, 872, 881, 890, 1058, 1061
HpyF3I CTNAG 4 cut(s) 532, 750, 834, 937
HpySE526I ACGT 2 cut(s) 101, 268
Hsp92II CATG 4 cut(s) 247, 634, 949, 1171
HspAI GCGC 2 cut(s) 259, 934
Kzo9I GATC 5 cut(s) 82, 170, 616, 722, 1103
Lsp1109I GCAGC 5 cut(s) 573, 580, 893, 1039, 1048
LweI GCATC 4 cut(s) 18, 46, 755, 1138
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 101, 268
MaeIII GTNAC 3 cut(s) 345, 701, 1085
MalI GATC 5 cut(s) 84, 172, 618, 724, 1105
MboI GATC 5 cut(s) 82, 170, 616, 722, 1103
MboII GAAGA 2 cut(s) 180, 993
MflI RGATCY 2 cut(s) 82, 170
MhlI GDGCHC 4 cut(s) 303, 376, 475, 531
MluCI AATT 5 cut(s) 366, 476, 730, 839, 971
MlyI GAGTC 2 cut(s) 368, 850
MmeI TCCRAC 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 319, 975
MseI TTAA 4 cut(s) 228, 402, 522, 842
MslI CAYNNNNRTG 2 cut(s) 534, 1139
MspA1I CMGCKG 3 cut(s) 586, 749, 1052
MspI CCGG 2 cut(s) 549, 1037
MspR9I CCNGG 5 cut(s) 549, 1017, 1029, 1037, 1038
MvaI CCWGG 2 cut(s) 1017, 1029
MwoI GCNNNNNNNGC 6 cut(s) 464, 872, 881, 890, 1058, 1061
NciI CCSGG 3 cut(s) 549, 1037, 1038
NdeII GATC 5 cut(s) 82, 170, 616, 722, 1103
NlaIII CATG 4 cut(s) 247, 634, 949, 1171
NlaIV GGNNCC 2 cut(s) 84, 905
NmuCI GTSAC 2 cut(s) 345, 1085
NspV TTCGAA 1 cut(s) 979
OliI CACNNNNGTG 1 cut(s) 1139
PaqCI CACCTGC 1 cut(s) 80
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 1182
PdmI GAANNNNTTC 2 cut(s) 319, 975
PfeI GAWTC 2 cut(s) 425, 950
PflFI GACNNNGTC 1 cut(s) 1168
PkrI GCNGC 6 cut(s) 588, 595, 710, 883, 1054, 1063
PleI GAGTC 2 cut(s) 367, 850
PpsI GAGTC 2 cut(s) 367, 850
PshAI GACNNNNGTC 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 1015, 1027
PspEI GGTNACC 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 1015, 1027
PspN4I GGNNCC 2 cut(s) 84, 905
PspPI GGNCC 5 cut(s) 436, 743, 787, 1013, 1164
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 2 cut(s) 82, 170
PsyI GACNNNGTC 1 cut(s) 1168
PvuII CAGCTG 3 cut(s) 586, 749, 1052
RsaI GTAC 2 cut(s) 275, 329
RsaNI GTAC 2 cut(s) 274, 328
RseI CAYNNNNRTG 2 cut(s) 534, 1139
SaqAI TTAA 4 cut(s) 228, 402, 522, 842
SatI GCNGC 6 cut(s) 587, 594, 709, 882, 1053, 1062
Sau3AI GATC 5 cut(s) 82, 170, 616, 722, 1103
Sau96I GGNCC 5 cut(s) 436, 743, 787, 1013, 1164
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 2 cut(s) 368, 850
ScrFI CCNGG 5 cut(s) 549, 1017, 1029, 1037, 1038
SduI GDGCHC 4 cut(s) 303, 376, 475, 531
SfaNI GCATC 4 cut(s) 18, 46, 755, 1138
SfcI CTRYAG 2 cut(s) 453, 1065
SfuI TTCGAA 1 cut(s) 979
SinI GGWCC 4 cut(s) 436, 743, 787, 1164
SmaI CCCGGG 1 cut(s) 1038
SmiMI CAYNNNNRTG 2 cut(s) 534, 1139
Sse9I AATT 5 cut(s) 366, 476, 730, 839, 971
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 3 cut(s) 706, 709, 875
SspI AATATT 1 cut(s) 519
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 5 cut(s) 547, 1015, 1027, 1035, 1036
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 5 cut(s) 212, 849, 967, 1073, 1141
TaiI ACGT 2 cut(s) 104, 271
TaqI TCGA 4 cut(s) 619, 979, 1106, 1185
TaqII GACCGA 1 cut(s) 528
TasI AATT 5 cut(s) 366, 476, 730, 839, 971
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 2 cut(s) 425, 950
Tru1I TTAA 4 cut(s) 228, 402, 522, 842
Tru9I TTAA 4 cut(s) 228, 402, 522, 842
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 345, 1085
TseI GCWGC 5 cut(s) 586, 593, 881, 1052, 1061
Tsp45I GTSAC 2 cut(s) 345, 1085
TspDTI ATGAA 3 cut(s) 432, 768, 903
TspGWI ACGGA 3 cut(s) 88, 254, 896
TspMI CCCGGG 1 cut(s) 1036
TspRI CASTG 1 cut(s) 732
Tth111I GACNNNGTC 1 cut(s) 1168
VpaK11BI GGWCC 4 cut(s) 436, 743, 787, 1164
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 1 cut(s) 971
XmaI CCCGGG 1 cut(s) 1036
XmnI GAANNNNTTC 2 cut(s) 319, 975
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.