Rh6AG164500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005573
Physical Location & Seq
Reverse (-)
26196143 .. 26216869
20727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG164500.1

Sequence Viewer

Length: 264 bp
ATGGGATCTCCCTTAGTCTCTCACCTTGTCAACTTGACACTTGTTGATCTTCCTGGGCTTACAAAAGTTGTTGTTGAGGGTCAGCCAGATAGTATTGTGCAGGACATTGAAAATATGGTTCGCTCCTACATTGAGAAGCCCAACAACATAATTTCAGCAATTTTTGTATGGCAACTTGAGAATGGGATTGAGGAGGAACCTGATAGGCTATTAGAAATATTCAAGTTGACACATCGTAAGAAGGGGAAAAAAATGAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

87

Amino Acids

9.87

Weight (kDa)

5.61

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 6 - 55 7.4e-08 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 110, 223
AjnI CCWGG 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 5, 46
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 5, 46
Bst2UI CCWGG 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 13
BstKTI GATC 2 cut(s) 8, 49
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 5, 46
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
CviJI RGCY 4 cut(s) 58, 85, 139, 208
CviKI_1 RGCY 4 cut(s) 58, 85, 139, 208
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 7, 48
DpnII GATC 2 cut(s) 5, 46
EcoRII CCWGG 1 cut(s) 52
FaiI YATR 4 cut(s) 116, 149, 169, 260
HincII GTYRAC 2 cut(s) 31, 228
HindII GTYRAC 2 cut(s) 31, 228
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 31, 228
Hpy8I GTNNAC 2 cut(s) 31, 228
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 5, 46
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 39, 66, 86, 99, 213
MalI GATC 2 cut(s) 7, 48
MboI GATC 2 cut(s) 5, 46
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 5
MluCI AATT 2 cut(s) 150, 159
MnlI CCTC 3 cut(s) 70, 184, 187
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeII GATC 2 cut(s) 5, 46
NlaIV GGNNCC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 5
Sau3AI GATC 2 cut(s) 5, 46
ScrFI CCNGG 1 cut(s) 54
SetI ASST 2 cut(s) 27, 202
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 150, 159
SspI AATATT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 52
TasI AATT 2 cut(s) 150, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.