Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005573

Physical Location & Seq

Genomic Coordinates Forward (+)

35275046 .. 35283790

Gene Structure 8745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATTGTCGCAAGGCGCAAGGAACGTGAGTACTTTGCAACCAGTCCTGACTATGGGCACTTGGCTAATAGAATGGGTTCAGAGTACCTTGCTAAACTTCTGTCACAGCACTTGGAGTCTGTAATTAGGGCTCGTATCCCAAGTATCACATCCTTGATTAACAAAAGCATTGATGAACTTGAATCCGAGATGGACCATCTTGGTAGGCCTATAGCCGTTGACGCTGGGAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

6.26

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	4 - 74	1.7e-17	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44590 AT2G44590 AT2G44590 AT3G60190
fragaria_vesca	FvH4_7g08650 FvH4_7g08650 FvH4_7g08650
malus_domestica	MD02G1226500.v1.1 MD07G1087500.v1.1
prunus_persica	Prupe.2G114300_v2.0.a1
pyrus_communis	pycom02g19540 pycom07g07000
rosa_chinensis	RchiOBHm_Chr1g0343681 RchiOBHm_Chr1g0343771
rosa_laevigata	RLG00000028954
rosa_multiflora	Rmu_sc0000021.1_g000003
rosa_roxburghii	Rroxscaffold_4G00310360
rosa_rugosa	Rorug01G0168300
rosa_samantha	Rh1AG184200 Rh1AG185200 Rh1BG152000 Rh1CG171100 Rh1DG183900 Rh3AG232400 Rh4CG303300 Rh6AG164500
rosa_wichuraiana	Rw0G012950 Rw1G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	32, 86
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	182
AoxI	GGCC	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	133
BccI	CCATC	2 cut(s)	184, 204
BceAI	ACGGC	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	60, 133
BspANI	GGCC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 230
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	31, 85
CviJI	RGCY	4 cut(s)	65, 131, 208, 215
CviKI_1	RGCY	4 cut(s)	65, 131, 208, 215
CviQI	GTAC	2 cut(s)	31, 85
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	133
FaiI	YATR	2 cut(s)	54, 212
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	133
GlaI	GCGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	116, 182
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	82, 187
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 230
HpySE526I	ACGT	1 cut(s)	25
HspAI	GCGC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	55, 60, 210
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	60, 133
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	159, 235
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	221, 230
NmuCI	GTSAC	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	208
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	32, 86
RsaNI	GTAC	2 cut(s)	31, 85
SaqAI	TTAA	2 cut(s)	159, 235
Sau96I	GGNCC	1 cut(s)	193
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	60, 133
SetI	ASST	2 cut(s)	28, 90
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	28
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	159, 235
Tru9I	TTAA	2 cut(s)	159, 235
TseFI	GTSAC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.