Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005573

Physical Location & Seq

Genomic Coordinates Forward (+)

22990694 .. 22991171

Gene Structure 478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGACAGGGACGATCCTTTTGACTGCACTGGTTGCTGTAGTCATTGCCACCGCCGTTACTCTTCGCCACCGCCAGTCTCATTCACATCCGGACAACTATACGGTGGCTCTGCACGGCGCCCTACTTTTCTTTGACTCGCAAAAGTTTGGTGAAATTGCTGGAGAGAAACACATTTCTTGGAGGGGTAATTCCGGTCTTCATGACGGCAGTGATTCTGCTTTCGGTCTCACCGACTTGGTGGGTGGCTTTCATGACAATGGAGATGCCGTCATGGTCACCTTTCCCCAGTCATTCACCATTACGGTGCTTAGCTGGAGCGTCATTGAATACTCTGCCAAGTATGATGACATGCACAAAGTTAGTGCTCAATTTAAAACCCTATCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

130

Amino Acids

14.11

Weight (kDa)

6.0

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	34 - 120	1.6e-21	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44590 AT2G44590 AT2G44590 AT3G60190
fragaria_vesca	FvH4_7g08650 FvH4_7g08650 FvH4_7g08650
malus_domestica	MD02G1226500.v1.1 MD07G1087500.v1.1
prunus_persica	Prupe.2G114300_v2.0.a1
pyrus_communis	pycom02g19540 pycom07g07000
rosa_chinensis	RchiOBHm_Chr1g0343681 RchiOBHm_Chr1g0343771
rosa_laevigata	RLG00000028954
rosa_multiflora	Rmu_sc0000021.1_g000003
rosa_roxburghii	Rroxscaffold_4G00310360
rosa_rugosa	Rorug01G0168300
rosa_samantha	Rh1AG184200 Rh1AG185200 Rh1BG152000 Rh1CG171100 Rh1DG183900 Rh3AG232400 Rh4CG303300 Rh6AG164500
rosa_wichuraiana	Rw0G012950 Rw1G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	2 cut(s)	54, 73
AclWI	GGATC	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	329
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	2 cut(s)	84, 233
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	91
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	164, 223, 271, 289
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	370
BceAI	ACGGC	4 cut(s)	41, 133, 223, 254
BcoDI	GTCTC	2 cut(s)	84, 233
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	183, 337
Bpu1102I	GCTNAGC	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	91, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse1I	ACTGG	3 cut(s)	36, 76, 289
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	91
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	36, 76, 289
BsgI	GTGCAG	2 cut(s)	12, 98
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	92, 195
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	84, 233
BsmFI	GGGAC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	54, 73
BspEI	TCCGGA	1 cut(s)	91
BspHI	TCATGA	2 cut(s)	202, 253
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	36, 76, 289
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	106, 307
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	311
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	84, 233
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	29, 217
CciI	TCATGA	2 cut(s)	202, 253
CfoI	GCGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	310
CviAII	CATG	4 cut(s)	203, 254, 274, 352
CviJI	RGCY	3 cut(s)	110, 249, 315
CviKI_1	RGCY	3 cut(s)	110, 249, 315
DdeI	CTNAG	1 cut(s)	311
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
FaeI	CATG	4 cut(s)	206, 257, 277, 355
FaiI	YATR	6 cut(s)	102, 204, 255, 275, 345, 353
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	202, 253, 273, 351
FokI	GGATG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	183, 337
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	2 cut(s)	92, 195
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	206, 257, 277, 355
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	137, 215
HpaII	CCGG	2 cut(s)	92, 195
HphI	GGTGA	4 cut(s)	164, 223, 271, 289
Hpy188III	TCNNGA	3 cut(s)	92, 203, 254
HpyCH4III	ACNGT	2 cut(s)	106, 307
HpyCH4V	TGCA	3 cut(s)	29, 115, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	206, 257, 277, 355
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	17, 89, 105, 147, 208, 301, 302
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	58, 277
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	56, 191
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	3 cut(s)	156, 190, 371
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	2 cut(s)	258, 305
MspI	CCGG	2 cut(s)	92, 195
MwoI	GCNNNNNNNGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	4 cut(s)	206, 257, 277, 355
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	2 cut(s)	202, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	121
RseI	CAYNNNNRTG	2 cut(s)	258, 305
SaqAI	TTAA	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	2 cut(s)	284, 317
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	258, 305
Sse9I	AATT	3 cut(s)	156, 190, 371
SsiI	CCGC	2 cut(s)	54, 73
SspDI	GGCGCC	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	106, 307
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	156, 190, 371
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	36, 217
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	191, 242
TspRI	CASTG	2 cut(s)	36, 217
XceI	RCATGY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.