RLG00000028954
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
30638784 .. 30644665
5882 bp
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UTR
Exon/CDS
Intron
RLM00000028954

Sequence Viewer

Length: 1506 bp
ATGGAGAGCTTGATCGGTTTGGTTAATCGGATACAGAGGGCCTGTACTGTGCTCGGCGACTACGGCGGTGGCGACAACGCTTTCTCGTCCTTGTGGGAAGCTCTGCCCTCTGTTGCCGTCGTCGGCGGCCAGAGTTCCGGCAAGTCTTCGGTGCTGGAGAGCATTGTAGGGCGTGACTTTCTTCCCAGAGGATCAGGGATTGTGACGAGGCGGCCTTTGGTGTTGCAGCTCCACAAGACGGACGAAGGGACTCAGGAGTATGCCGAGTTTCTTCATCTCTCCAAGAGAAGATTTACTGATTTCTCCGCGGTTCGGAGGGAAATTCAGGATGAAACTGATAGAGTAACAGGAAGGTCAAAAATGATATCTCCTGTTCCTATCCATCTCAGTATCTACTCCCCCAACGTTGTGAACTTGACCCTAATTGATTTACCTGGTTTGACGAAAGTTGCTGTTGAGGGCCAGCCTGAAAGTATCGTTGAAGATATTGAAAACATGGTTCGATCCTATGTTGAGAAGCGCACAATAATCTTGCGGTCAGATGGTCTGAAACATGCAATTATTGTTATTGAAGGAAGATCTTATCGCCTGCAACAACCTTGGGTTGGAGTTGTGAACCGTTCCCAAGCAGATATTAATAAAAATACAGACATGATTGTCGCAAGGCTCTTTAGTAATTGTGGCAAATTAGATGAGATAGACTCATCGAATTTGGTTTATTTCTATTCACGAAAAAAATCATCTATAATACTACTCTGTGACAGGATTTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAAGCTTCCATTTGATCGACATCTGTCTCTGCAGAATGTAAGGAAAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTGATTGCCCCAGAGCAAGGTTACCGCCGCCTTATCGAGGGATCACTGAATTACTTTAGAGGTCCAGCTGAGGCTTCTGTGGATGCTGAATTGAGACGGTTTCCAACTCTGCAAGCTGAAATAGCTGCAGCAGCTAATGAAGCATTGGAAAGGTTCCGTGATGAGAGTAAGAAGTCAACTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGGAATTCTTTCGAAGACTTCCACAAGAAGTGGAGAAACCAGTTGGCCCAGGAGGAAAACCAGGACACCCGGGAGGAAATCCAGCTGCCAATGCTGCTGTGGACCGCTATTCAGAGGGTCACTTTCGGAGGATAGGATCGAACGTGTCCTCTTATGTGGGAATGGTGTCTGAGACACTGAGGAATACGATTCCCAAGGCTGTCGTTCACTGTCAAGTCAGGGAGGCAAAAACGTCATTGCTAAATCACTTCTATATACAAATAGGAAAGAGAGAGGGTAAGCAGTTAGGTCAGCTGCTTGACGAAGACCCAGCATTGATGGAGAGGAGGCTGCAGTGTGCTAAAAGGCTTGAATTATACAAATCAGCTAGGGATGAGGTTGATTCTGTAGCATGGGTCCGCTGA

Protein Analysis

502

Amino Acids

56.09

Weight (kDa)

8.89

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 38 - 178 4.9e-41 Dynamin family
Dynamin_M PF01031 186 - 221 4.2e-06 Dynamin central region
Dynamin_M PF01031 252 - 367 2.7e-10 Dynamin central region
GED PF02212 405 - 497 7.1e-24 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 656
AccII CGCG 1 cut(s) 308
AclI AACGTT 1 cut(s) 405
AclWI GGATC 4 cut(s) 199, 498, 934, 1246
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 3 cut(s) 321, 709, 1106
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 5 cut(s) 238, 312, 605, 902, 922
AflIII ACRYGT 1 cut(s) 1245
AgsI TTSAA 4 cut(s) 482, 491, 572, 1454
AjnI CCWGG 3 cut(s) 433, 1150, 1162
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 837, 973, 1268
AlwI GGATC 4 cut(s) 199, 498, 934, 1246
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 1171
AoxI GGCC 5 cut(s) 39, 127, 212, 460, 1147
ApoI RAATTY 3 cut(s) 321, 709, 1106
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 2 cut(s) 522, 1071
AspS9I GGNCC 6 cut(s) 39, 460, 947, 1148, 1204, 1498
AsuC2I CCSGG 2 cut(s) 1172, 1173
AsuII TTCGAA 1 cut(s) 1114
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 3 cut(s) 947, 1204, 1498
BbsI GAAGAC 3 cut(s) 138, 1123, 1413
Bbv12I GWGCWC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 954
BccI CCATC 4 cut(s) 390, 536, 863, 1414
BceAI ACGGC 2 cut(s) 79, 101
BciT130I CCWGG 3 cut(s) 435, 1152, 1164
BciVI GTATCC 1 cut(s) 24
BcnI CCSGG 2 cut(s) 1172, 1173
BcoDI GTCTC 3 cut(s) 837, 973, 1268
BfaI CTAG 1 cut(s) 1470
BfmI CTRYAG 4 cut(s) 836, 1011, 1433, 1488
BfuI GTATCC 1 cut(s) 24
BglII AGATCT 1 cut(s) 578
Bme1390I CCNGG 5 cut(s) 435, 1152, 1164, 1172, 1173
Bme18I GGWCC 3 cut(s) 947, 1204, 1498
BmeT110I CYCGRG 1 cut(s) 1171
BmgT120I GGNCC 6 cut(s) 39, 460, 947, 1148, 1204, 1498
BmiI GGNNCC 2 cut(s) 1040, 1499
BmrFI CCNGG 5 cut(s) 435, 1152, 1164, 1172, 1173
BmsI GCATC 1 cut(s) 958
BoxI GACNNNNGTC 1 cut(s) 829
BpiI GAAGAC 3 cut(s) 138, 1123, 1413
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 954
Bpu14I TTCGAA 1 cut(s) 1114
BpuMI CCSGG 2 cut(s) 1172, 1173
BsaBI GATNNNNATC 2 cut(s) 825, 873
BsaJI CCNNGG 5 cut(s) 306, 599, 1150, 1171, 1296
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 312, 605, 902, 922
Bse1I ACTGG 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 1337
Bse8I GATNNNNATC 2 cut(s) 825, 873
BseBI CCWGG 3 cut(s) 435, 1152, 1164
BseDI CCNNGG 5 cut(s) 306, 599, 1150, 1171, 1296
BseGI GGATG 3 cut(s) 334, 973, 1480
BseJI GATNNNNATC 2 cut(s) 825, 873
BseLI CCNNNNNNNGG 5 cut(s) 238, 312, 605, 902, 922
BseMI GCAATG 1 cut(s) 1337
BseMII CTCAG 5 cut(s) 266, 400, 945, 1263, 1271
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 1 cut(s) 1441
BseYI CCCAGC 1 cut(s) 1411
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 5 cut(s) 41, 129, 214, 462, 1149
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 2 cut(s) 138, 1172
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 5 cut(s) 238, 312, 605, 902, 922
BsmAI GTCTC 3 cut(s) 837, 973, 1268
BsmBI CGTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 5 cut(s) 41, 129, 214, 462, 1149
BsoBI CYCGRG 1 cut(s) 1171
Bsp119I TTCGAA 1 cut(s) 1114
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
BspANI GGCC 5 cut(s) 41, 129, 214, 462, 1149
BspCNI CTCAG 5 cut(s) 265, 399, 946, 1264, 1272
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 1040, 1499
BspMAI CTGCAG 3 cut(s) 840, 1015, 1437
BspPI GGATC 4 cut(s) 199, 498, 934, 1246
BspT104I TTCGAA 1 cut(s) 1114
BsrDI GCAATG 1 cut(s) 1337
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 5 cut(s) 306, 599, 1150, 1171, 1296
BssMI GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
BssT1I CCWWGG 2 cut(s) 599, 1296
Bst2UI CCWGG 3 cut(s) 435, 1152, 1164
Bst4CI ACNGT 5 cut(s) 49, 620, 984, 1102, 1313
BstBI TTCGAA 1 cut(s) 1114
BstC8I GCNNGC 4 cut(s) 464, 590, 795, 999
BstDEI CTNAG 6 cut(s) 252, 386, 954, 1072, 1272, 1280
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 905
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 3 cut(s) 334, 973, 1480
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 2 cut(s) 522, 1071
BstKTI GATC 7 cut(s) 15, 194, 506, 581, 823, 929, 1241
BstMAI GTCTC 3 cut(s) 837, 973, 1268
BstMBI GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
BstMWI GCNNNNNNNGC 6 cut(s) 63, 1007, 1016, 1025, 1193, 1196
BstNI CCWGG 3 cut(s) 435, 1152, 1164
BstNSI RCATGY 1 cut(s) 557
BstPAI GACNNNNGTC 1 cut(s) 829
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 5 cut(s) 433, 1150, 1162, 1170, 1171
BstSFI CTRYAG 4 cut(s) 836, 1011, 1433, 1488
BstUI CGCG 1 cut(s) 308
BstV2I GAAGAC 3 cut(s) 138, 1123, 1413
BstX2I RGATCY 1 cut(s) 578
BstYI RGATCY 1 cut(s) 578
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 5 cut(s) 41, 129, 214, 462, 1149
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 334, 973, 1480
BtsI GCAGTG 1 cut(s) 1442
BtsIMutI CAGTG 4 cut(s) 929, 1277, 1309, 1442
Cac8I GCNNGC 4 cut(s) 464, 590, 795, 999
CaiI CAGNNNCTG 1 cut(s) 866
CfoI GCGC 2 cut(s) 522, 1071
Cfr13I GGNCC 6 cut(s) 39, 460, 947, 1148, 1204, 1498
Cfr42I CCGCGG 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 1171
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 1 cut(s) 45
CviAII CATG 5 cut(s) 496, 554, 652, 1081, 1494
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 6 cut(s) 252, 386, 954, 1072, 1272, 1280
DpnI GATC 7 cut(s) 14, 193, 505, 580, 822, 928, 1240
DpnII GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
EaeI YGGCCR 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 599, 1296
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 947, 1204, 1498
Eco88I CYCGRG 1 cut(s) 1171
Eco91I GGTNACC 1 cut(s) 905
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 1106
EcoRII CCWGG 3 cut(s) 433, 1150, 1162
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 599, 1296
ErhI CCWWGG 2 cut(s) 599, 1296
Esp3I CGTCTC 1 cut(s) 973
FaeI CATG 5 cut(s) 499, 557, 655, 1084, 1497
FaqI GGGAC 1 cut(s) 262
FatI CATG 5 cut(s) 495, 553, 651, 1080, 1493
FokI GGATG 3 cut(s) 341, 980, 1487
FspBI CTAG 1 cut(s) 1470
GlaI GCGC 2 cut(s) 521, 1070
GsaI CCCAGC 1 cut(s) 1415
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 5 cut(s) 41, 129, 214, 462, 1149
HapII CCGG 2 cut(s) 138, 1172
HhaI GCGC 2 cut(s) 522, 1071
Hin1II CATG 5 cut(s) 499, 557, 655, 1084, 1497
Hin6I GCGC 2 cut(s) 520, 1069
HinP1I GCGC 2 cut(s) 520, 1069
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 5 cut(s) 250, 701, 1085, 1291, 1484
HpaII CCGG 2 cut(s) 138, 1172
Hpy166II GTNNAC 6 cut(s) 412, 616, 1062, 1078, 1204, 1309
Hpy188I TCNGA 8 cut(s) 30, 315, 541, 549, 862, 1216, 1230, 1273
Hpy188III TCNNGA 3 cut(s) 254, 326, 729
Hpy8I GTNNAC 6 cut(s) 412, 616, 1062, 1078, 1204, 1309
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 3 cut(s) 239, 345, 566
HpyCH4III ACNGT 5 cut(s) 49, 620, 984, 1102, 1313
HpyCH4IV ACGT 3 cut(s) 405, 1245, 1334
HpyCH4V TGCA 7 cut(s) 226, 557, 592, 838, 997, 1013, 1435
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 1007, 1016, 1025, 1193, 1196
HpyF3I CTNAG 6 cut(s) 252, 386, 954, 1072, 1272, 1280
HpySE526I ACGT 3 cut(s) 405, 1245, 1334
Hsp92II CATG 5 cut(s) 499, 557, 655, 1084, 1497
HspAI GCGC 2 cut(s) 520, 1069
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
LmnI GCTCC 1 cut(s) 234
LweI GCATC 1 cut(s) 958
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 1 cut(s) 1470
MaeII ACGT 3 cut(s) 405, 1245, 1334
MaeIII GTNAC 6 cut(s) 173, 202, 343, 758, 905, 1220
MalI GATC 7 cut(s) 14, 193, 505, 580, 822, 928, 1240
MboI GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
MboII GAAGA 8 cut(s) 138, 173, 263, 300, 494, 588, 1128, 1418
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 244, 695
MmeI TCCRAC 2 cut(s) 586, 1013
MroXI GAANNNNTTC 1 cut(s) 1110
MseI TTAA 2 cut(s) 24, 636
MspA1I CMGCKG 6 cut(s) 308, 790, 953, 1187, 1396, 1503
MspI CCGG 2 cut(s) 138, 1172
MspR9I CCNGG 5 cut(s) 435, 1152, 1164, 1172, 1173
MvaI CCWGG 3 cut(s) 435, 1152, 1164
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 63, 1007, 1016, 1025, 1193, 1196
NciI CCSGG 2 cut(s) 1172, 1173
NdeII GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
NlaIII CATG 5 cut(s) 499, 557, 655, 1084, 1497
NlaIV GGNNCC 2 cut(s) 1040, 1499
NmeAIII GCCGAG 2 cut(s) 33, 289
NmuCI GTSAC 4 cut(s) 173, 202, 758, 1220
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 1114
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 3 cut(s) 1085, 1291, 1484
PleI GAGTC 2 cut(s) 244, 695
PpsI GAGTC 2 cut(s) 244, 695
PshAI GACNNNNGTC 1 cut(s) 829
PshBI ATTAAT 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 433, 1150, 1162
PspEI GGTNACC 1 cut(s) 905
PspFI CCCAGC 1 cut(s) 1411
PspGI CCWGG 3 cut(s) 433, 1150, 1162
PspN4I GGNNCC 2 cut(s) 1040, 1499
PspPI GGNCC 6 cut(s) 39, 460, 947, 1148, 1204, 1498
PstI CTGCAG 3 cut(s) 840, 1015, 1437
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 1 cut(s) 578
PvuII CAGCTG 4 cut(s) 790, 953, 1187, 1396
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 24, 636
Sau3AI GATC 7 cut(s) 12, 191, 503, 578, 820, 926, 1238
Sau96I GGNCC 6 cut(s) 39, 460, 947, 1148, 1204, 1498
SchI GAGTC 2 cut(s) 244, 695
ScrFI CCNGG 5 cut(s) 435, 1152, 1164, 1172, 1173
SduI GDGCHC 1 cut(s) 54
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 4 cut(s) 836, 1011, 1433, 1488
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 1114
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 3 cut(s) 947, 1204, 1498
SmaI CCCGGG 1 cut(s) 1173
SspMI CTAG 1 cut(s) 1470
StyD4I CCNGG 5 cut(s) 433, 1150, 1162, 1170, 1171
StyI CCWWGG 2 cut(s) 599, 1296
TaaI ACNGT 5 cut(s) 49, 620, 984, 1102, 1313
TaiI ACGT 3 cut(s) 408, 1248, 1337
TaqI TCGA 6 cut(s) 502, 707, 823, 921, 1114, 1241
TatI WGTACW 1 cut(s) 44
TauI GCSGC 3 cut(s) 129, 214, 915
TfiI GAWTC 3 cut(s) 1085, 1291, 1484
Tru1I TTAA 2 cut(s) 24, 636
Tru9I TTAA 2 cut(s) 24, 636
TscAI CASTG 4 cut(s) 936, 1284, 1316, 1442
TseFI GTSAC 4 cut(s) 173, 202, 758, 1220
Tsp45I GTSAC 4 cut(s) 173, 202, 758, 1220
TspDTI ATGAA 3 cut(s) 263, 345, 1038
TspGWI ACGGA 2 cut(s) 254, 1031
TspMI CCCGGG 1 cut(s) 1171
TspRI CASTG 4 cut(s) 936, 1284, 1316, 1442
VpaK11BI GGWCC 3 cut(s) 947, 1204, 1498
VspI ATTAAT 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 3 cut(s) 321, 709, 1106
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 1198
XmaI CCCGGG 1 cut(s) 1171
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 1 cut(s) 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.