RchiOBHm_Chr1g0344851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
37184394 .. 37186509
2116 bp
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UTR
Exon/CDS
Intron
PRQ57125

Sequence Viewer

Length: 129 bp
ATGCTCAAGCTCGAAGGTCGAATCTTCCTTGCTTGGATAAGCTCAGGGATGAGCTTTCTTGAGAGAATTGAGATTGGGTACTTGCATCTGAGGAATCTCGGCAACATTGGAATGGTTTCAAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

42

Amino Acids

4.84

Weight (kDa)

8.36

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 3 cut(s) 10, 42, 54
AluI AGCT 3 cut(s) 10, 42, 54
Asp700I GAANNNNTTC 1 cut(s) 115
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 80
BseGI GGATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 57, 80
BspCNI CTCAG 2 cut(s) 56, 81
BstDEI CTNAG 2 cut(s) 43, 89
BstF5I GGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 54
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 3 cut(s) 10, 42, 54
CviKI_1 RGCY 3 cut(s) 10, 42, 54
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 43, 89
FokI GGATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 21, 94
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 43, 89
LpnPI CCDG 1 cut(s) 30
LweI GCATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 66
MnlI CCTC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 115
MslI CAYNNNNRTG 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 21, 94
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 110
SetI ASST 4 cut(s) 12, 19, 44, 56
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 8 cut(s) 19, 23, 41, 45, 57, 71, 94, 110
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 5, 59
SmoI CTYRAG 2 cut(s) 5, 59
Sse9I AATT 1 cut(s) 66
TaqI TCGA 2 cut(s) 12, 19
TasI AATT 1 cut(s) 66
TfiI GAWTC 2 cut(s) 21, 94
XmnI GAANNNNTTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.