Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0016977

Physical Location & Seq

Genomic Coordinates Forward (+)

258234 .. 259660

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggagtcgaaccttcccacaaggtttacccagagtttcagtctcttcgtgttgtccacagaactgggtttcattttcgatctccccgccactggattaacggaaggacttcctacgtttggtccatgcattacattggtgtccttggtggacctggaattggcgaaaaatggttttgattatgcccggaaaaggaagaagtggctgtttgtaatggctgccttgggcttctctggttatgatgcttatagggtttatcacttgccttctgtatgtcaaaaaagaaagaggcttttgaagcttttaggagctttagtttttgtagctgaagtagtttcagactttgttgagtcgattgaagttgtgtctaaagatttgaaggagtttctgcaatttgattctgatgaaattccgaatagcttgaagcaagtttcgaaattgctaggtcggatgagtttttggggtctgttgttaaggtcacacaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

8.89

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344851
rosa_multiflora	Rmu_sc0000894.1_g000056 Rmu_sc0001200.1_g000040
rosa_roxburghii	Rroxscaffold_1G00070890 Rroxscaffold_3G00221200 Rroxscaffold_5G00343880 Rroxscaffold_7G00213440
rosa_samantha	Rh1AG143100 Rh4BG128300 Rh6AG209900 Rh6BG213800 Rh6BG487200 Rh6DG205900
rosa_wichuraiana	Rw4G007460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	92, 119, 160, 192
AgsI	TTSAA	4 cut(s)	298, 359, 379, 424
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	5 cut(s)	301, 311, 326, 420, 487
AluI	AGCT	5 cut(s)	301, 311, 326, 420, 487
Alw26I	GTCTC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	122, 151
AsuC2I	CCSGG	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	122, 151
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	155, 187
Bme18I	GGWCC	2 cut(s)	122, 151
BmgT120I	GGNCC	2 cut(s)	122, 151
BmrFI	CCNGG	2 cut(s)	155, 187
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	144, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 119, 160, 192
Bse1I	ACTGG	2 cut(s)	69, 97
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	144, 222
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	4 cut(s)	92, 119, 160, 192
BseNI	ACTGG	2 cut(s)	69, 97
BseXI	GCAGC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	92, 119, 160, 192
BsmAI	GTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	69, 97
BssECI	CCNNGG	2 cut(s)	144, 222
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	144, 222
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	153, 185
BstV1I	GCAGC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	122, 151
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	9 cut(s)	205, 218, 228, 292, 301, 311, 326, 420, 487
CviKI_1	RGCY	9 cut(s)	205, 218, 228, 292, 301, 311, 326, 420, 487
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	144, 222
Eco47I	GGWCC	2 cut(s)	122, 151
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	144, 222
EcoT22I	ATGCAT	1 cut(s)	131
ErhI	CCWWGG	2 cut(s)	144, 222
FaeI	CATG	1 cut(s)	129
FaiI	YATR	5 cut(s)	127, 183, 240, 249, 274
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	5, 350, 398
HpaII	CCGG	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	27, 57, 151
Hpy188I	TCNGA	4 cut(s)	340, 403, 414, 450
Hpy8I	GTNNAC	3 cut(s)	27, 57, 151
HpyAV	CCTTC	4 cut(s)	23, 98, 276, 373
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	129, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	7 cut(s)	44, 50, 78, 140, 167, 200, 219
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	37, 208
MluCI	AATT	4 cut(s)	158, 392, 408, 437
MlyI	GAGTC	2 cut(s)	14, 359
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	98, 473
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	155, 187
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	13, 358
PpsI	GAGTC	2 cut(s)	13, 358
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	122, 151
SaqAI	TTAA	2 cut(s)	98, 473
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	122, 151
SchI	GAGTC	2 cut(s)	14, 359
ScrFI	CCNGG	2 cut(s)	155, 187
SfaNI	GCATC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	2 cut(s)	122, 151
Sse9I	AATT	4 cut(s)	158, 392, 408, 437
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	153, 185
StyI	CCWWGG	2 cut(s)	144, 222
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	4 cut(s)	8, 78, 353, 434
TasI	AATT	4 cut(s)	158, 392, 408, 437
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	98, 473
Tru9I	TTAA	2 cut(s)	98, 473
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	61, 420
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	122, 151
XapI	RAATTY	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.