Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016977

Physical Location & Seq

Genomic Coordinates Forward (+)

37381746 .. 37386008

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG209900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGACCTGGAATTGGCGGAAAAGGGTTTTGATTACGCCCGGAAAAGGAACAAGTGGCTGTTTGTGATGGCTGCTTTGGGCTTCTCTGGTTGTGGTGCTTGTAGGGTTTATCACTTGCCTTCAGTGTGTCAAAAAAGAAAGAGGCTTTTTAAGCCTCTAGGGTCTTTAGTTTCTGTTGCTGAAGTAGTTTCAGACTCTGCTGAGTCGATTGGAGTTGTGTCTACAGATTTGAAGGAGTTTATGCAATCTGATTCTGATGAAATTCGGAATAGCTTGAAGCAAGTTTCGAAAGTAGCTAGGTCGGATGAGTTTTTGGGAGAAAGACCTTCATCAAAGTGGAGGCATCATGGTAAACTACGTTTACAGGGCAAATATCTGTCTCATGTACATGTGGTGCACCGTGTCTACGAACTGCTAATACCAGACAGTAAAGGAAGAAAATTCTACTCATGTCTGTCGCAGGACTGCAACTTTGTTCGATCACGAAACTTGATAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.89

Weight (kDa)

9.56

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344851
rosa_multiflora	Rmu_sc0000894.1_g000056 Rmu_sc0001200.1_g000040
rosa_roxburghii	Rroxscaffold_1G00070890 Rroxscaffold_3G00221200 Rroxscaffold_5G00343880 Rroxscaffold_7G00213440
rosa_samantha	Rh1AG143100 Rh4BG128300 Rh6AG209900 Rh6BG213800 Rh6BG487200 Rh6DG205900
rosa_wichuraiana	Rw4G007460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	221, 405
AciI	CCGC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	261, 440
AcuI	CTGAAG	2 cut(s)	105, 201
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	13, 45
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	232, 277
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	273, 296
AluI	AGCT	2 cut(s)	273, 296
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	384
Alw44I	GTGCAC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	197
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	261, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	2 cut(s)	158, 297
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	8, 40
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	8, 40
BmsI	GCATC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 45
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	13, 45
BseMII	CTCAG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	13, 45
BsmAI	GTCTC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	479
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	385
BssMI	GATC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	401, 428
BstAUI	TGTACA	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	482
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	6, 38
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	4 cut(s)	347, 383, 389, 450
CviJI	RGCY	7 cut(s)	58, 71, 81, 145, 154, 273, 296
CviKI_1	RGCY	7 cut(s)	58, 71, 81, 145, 154, 273, 296
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	105, 201
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	350, 386, 392, 453
FaiI	YATR	5 cut(s)	242, 348, 384, 390, 451
FatI	CATG	4 cut(s)	346, 382, 388, 449
FblI	GTMKAC	2 cut(s)	221, 405
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	158, 297
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	1 cut(s)	40
Hin1II	CATG	4 cut(s)	350, 386, 392, 453
HinfI	GANTC	3 cut(s)	194, 203, 251
HpaII	CCGG	1 cut(s)	40
Hpy166II	GTNNAC	5 cut(s)	222, 353, 362, 397, 406
Hpy188I	TCNGA	5 cut(s)	193, 250, 256, 267, 304
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	5 cut(s)	222, 353, 362, 397, 406
HpyAV	CCTTC	3 cut(s)	129, 226, 336
HpyCH4III	ACNGT	2 cut(s)	401, 428
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	244, 397, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	350, 386, 392, 453
Kzo9I	GATC	1 cut(s)	479
LpnPI	CCDG	6 cut(s)	20, 53, 72, 350, 435, 446
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	158, 297
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	11, 261, 440
MlyI	GAGTC	2 cut(s)	188, 212
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	135, 165, 333
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	334, 387
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	8, 40
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	479
NlaIII	CATG	4 cut(s)	350, 386, 392, 453
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	287
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	188, 211
PpsI	GAGTC	2 cut(s)	188, 211
PscI	ACATGT	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	402, 434
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	334, 387
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	479
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	188, 212
ScrFI	CCNGG	2 cut(s)	8, 40
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	7 cut(s)	9, 275, 298, 302, 328, 361, 499
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	334, 387
Sse9I	AATT	3 cut(s)	11, 261, 440
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	2 cut(s)	158, 297
StyD4I	CCNGG	2 cut(s)	6, 38
TaaI	ACNGT	2 cut(s)	401, 428
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	206, 287, 478
TasI	AATT	3 cut(s)	11, 261, 440
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	273, 318
TspRI	CASTG	1 cut(s)	129
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	261, 440
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	221, 405
XspI	CTAG	2 cut(s)	158, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.