Rh1AG143100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
27010029 .. 27015235
5207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG143100.1

Sequence Viewer

Length: 256 bp
ATGGCAATGATGCACCTCAGAAGAGATCCAAGATTTTCGTCAATTTTTGGGGGAAACTTTAGCATTGTTTCACAAGAACTGGCTCCTCAAATTTTGATCGAAAACTGTTTTATTCACTTATCTAAAATTCTGCTCTTCAGTGATTTTTTTGTTTCTAAATTTGTGTATTGCTATATTAACATGTCAATGGAAATCAAACTAATGGTGTCCACAGATACCAAGGTCTTTAGCTCAATGAAGGCTTTTAATTCATTCA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.88

Weight (kDa)

8.71

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 3 cut(s) 90, 126, 158
AcuI CTGAAG 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 180
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
AlwI GGATC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 90, 126, 158
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BmiI GGNNCC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 75
Bsp143I GATC 2 cut(s) 25, 96
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 25, 96
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 16, 140
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 2 cut(s) 28, 99
BstMBI GATC 2 cut(s) 25, 96
BstNSI RCATGY 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 145
CviAII CATG 1 cut(s) 181
CviJI RGCY 3 cut(s) 83, 231, 242
CviKI_1 RGCY 3 cut(s) 83, 231, 242
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 27, 98
DpnII GATC 2 cut(s) 25, 96
Eam1104I CTCTTC 2 cut(s) 16, 140
EarI CTCTTC 2 cut(s) 16, 140
Eco130I CCWWGG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 174, 182
FatI CATG 1 cut(s) 180
Hin1II CATG 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 25, 96
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 1 cut(s) 65
MalI GATC 2 cut(s) 27, 98
MboI GATC 2 cut(s) 25, 96
MboII GAAGA 2 cut(s) 33, 127
MflI RGATCY 1 cut(s) 25
MluCI AATT 5 cut(s) 42, 90, 126, 158, 247
MnlI CCTC 2 cut(s) 26, 96
MseI TTAA 2 cut(s) 177, 246
MslI CAYNNNNRTG 1 cut(s) 185
NdeII GATC 2 cut(s) 25, 96
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 84
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 177, 246
Sau3AI GATC 2 cut(s) 25, 96
SetI ASST 3 cut(s) 18, 225, 233
SgeI CNNG 5 cut(s) 42, 86, 92, 193, 232
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 5 cut(s) 42, 90, 126, 158, 247
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 42, 90, 126, 158, 247
Tru1I TTAA 2 cut(s) 177, 246
Tru9I TTAA 2 cut(s) 177, 246
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 240, 251
TspRI CASTG 1 cut(s) 145
XapI RAATTY 3 cut(s) 90, 126, 158
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.