Rroxscaffold_3G00221200
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
3935547 .. 3940954
5408 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00221200.1

Sequence Viewer

Length: 333 bp
ATGGTGGAAGCTAGATTAGTTTGTTCGGTCATTGCACTGTTAGAACATTGGAAGGAGTTATTGTTGAATCTTCAAGATCAGAATTTGGTGCTTCCTATTACGGCGAGAGTGTGGTTCGTTAGTAATGGAGAATATGTAAAAGCTAGTTTGGCTGAGTTGGAACATTGGAGCTATAAAGCAACAGATGAGGGTAAGACCTACGTGATTGGTGCTAAGAAGTCTTCAGCGAAACATGTTGACTACAAAAAGAACAAAATTCAGCGGCTTCAACGCATTCTCGAAAAGGAAATGGCGCAATCGCTAACTCTAAGCCGGACTAGAGCCTTAGAGTGA

Protein Analysis

110

Amino Acids

12.68

Weight (kDa)

9.27

Isoelectric Point (pI)

23.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AcsI RAATTY 2 cut(s) 82, 255
AcuI CTGAAG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 67, 74, 269
AluBI AGCT 3 cut(s) 11, 143, 171
AluI AGCT 3 cut(s) 11, 143, 171
ApoI RAATTY 2 cut(s) 82, 255
AspLEI GCGC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 117
BfaI CTAG 3 cut(s) 12, 144, 318
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 202
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 120, 150
Bse3DI GCAATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 313
BsmI GAATGC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 30
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 4 cut(s) 153, 213, 308, 325
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 295
CviAII CATG 1 cut(s) 233
CviJI RGCY 7 cut(s) 11, 143, 152, 171, 265, 312, 323
CviKI_1 RGCY 7 cut(s) 11, 143, 152, 171, 265, 312, 323
DdeI CTNAG 4 cut(s) 153, 213, 308, 325
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 135, 174, 234
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 3 cut(s) 12, 144, 318
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 263
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 74, 278
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 4 cut(s) 153, 213, 308, 325
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 1 cut(s) 326
MaeI CTAG 3 cut(s) 12, 144, 318
MaeII ACGT 1 cut(s) 201
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 62, 213
MluCI AATT 2 cut(s) 82, 255
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 236
NspI RCATGY 1 cut(s) 236
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 264
Ppu21I YACGTR 1 cut(s) 202
PscI ACATGT 1 cut(s) 232
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 76
SetI ASST 5 cut(s) 13, 145, 173, 200, 204
SgeI CNNG 8 cut(s) 24, 86, 117, 156, 214, 245, 290, 325
Sse9I AATT 2 cut(s) 82, 255
SsiI CCGC 1 cut(s) 262
SspMI CTAG 3 cut(s) 12, 144, 318
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 279
TaqII GACCGA 1 cut(s) 16
TasI AATT 2 cut(s) 82, 255
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 42
TspRI CASTG 1 cut(s) 42
XapI RAATTY 2 cut(s) 82, 255
XceI RCATGY 1 cut(s) 236
XspI CTAG 3 cut(s) 12, 144, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.