Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016977

Physical Location & Seq

Genomic Coordinates Forward (+)

13659867 .. 13690283

Gene Structure 30417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGAAGTTTTTGCAATTTGGTTCTGATGAAATTCCGAATAGCTTGAAGCAAGTTTCGAAAATCGCTAGGTTGGATGAGTTTTCGGCGTCTATTGTTAAGGTCACACAAGCTGTAACATTGGGAGTTTTGAGGGGTTATCAAGCACAAGCCAAGAGTCAGAGTCATGGTGACGGTTTGGTTTTTTGGATTCTATCTGTACTCATAGGTAAGATCTACGTGATTGTTGCTAAGAAGTCTTCAGCGAAAGGTTGTGACTACGAAAGGAACAAAATTCAGCGGCTTCAACGCATTCTCCAAAAGGGACTGAGATTGGTAGAACTTCATAATGGCAATGATGCACTGAACCTTAGGAAAGATCCAAGATTTTGGTCAATTTTTGGAAGACACTTTAGCTTTGTTTCAGAAGAAGCGCCTGCTAAAGTTTTGATCCAAAACTGTTTCATTCAGTTATCTAAAATTATGCTCTTGAGAGCATCAATACTGTTAATAAACATAGTAAAGAAAAGCATCGTAACCTCAAGAATCCGAAAAAAAAGGCATGACTCTAGTATCCATAGACATTTTTTTATCATCCTCACTTCGAGCCCGAAGTACATGTACAATCGGGAACTATGGCCTAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

24.04

Weight (kDa)

10.46

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016977)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344851
rosa_multiflora	Rmu_sc0000894.1_g000056 Rmu_sc0001200.1_g000040
rosa_roxburghii	Rroxscaffold_1G00070890 Rroxscaffold_3G00221200 Rroxscaffold_5G00343880 Rroxscaffold_7G00213440
rosa_samantha	Rh1AG143100 Rh4BG128300 Rh6AG209900 Rh6BG213800 Rh6BG487200 Rh6DG205900
rosa_wichuraiana	Rw4G007460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	353, 424
AcsI	RAATTY	2 cut(s)	33, 273
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	3 cut(s)	201, 596, 602
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	49, 287
AluBI	AGCT	3 cut(s)	45, 113, 396
AluI	AGCT	3 cut(s)	45, 113, 396
AlwI	GGATC	2 cut(s)	353, 424
AoxI	GGCC	1 cut(s)	617
ApoI	RAATTY	2 cut(s)	33, 273
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	535, 568
BanII	GRGCYC	1 cut(s)	590
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
BbsI	GAAGAC	2 cut(s)	231, 391
BciVI	GTATCC	1 cut(s)	563
BfaI	CTAG	3 cut(s)	69, 549, 621
BfoI	RGCGCY	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmsI	GCATC	3 cut(s)	328, 485, 519
BpiI	GAAGAC	2 cut(s)	231, 391
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	490, 505
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse21I	CCTNAGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	82, 573
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	213, 358, 429
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	1 cut(s)	300
BspPI	GGATC	2 cut(s)	353, 424
BspT104I	TTCGAA	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	600
BssMI	GATC	3 cut(s)	213, 358, 429
BssNI	GRCGYC	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	176, 440, 486
BstACI	GRCGYC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	3 cut(s)	231, 308, 350
BstF5I	GGATG	2 cut(s)	82, 573
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	216, 361, 432
BstMBI	GATC	3 cut(s)	213, 358, 429
BstNSI	RCATGY	1 cut(s)	601
BstV2I	GAAGAC	2 cut(s)	231, 391
BstX2I	RGATCY	2 cut(s)	213, 358
BstXI	CCANNNNNNTGG	1 cut(s)	369
BstYI	RGATCY	2 cut(s)	213, 358
Bsu36I	CCTNAGG	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	82, 573
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	415
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	200, 595, 601
CviAII	CATG	3 cut(s)	167, 542, 598
CviJI	RGCY	7 cut(s)	45, 113, 152, 283, 396, 588, 619
CviKI_1	RGCY	7 cut(s)	45, 113, 152, 283, 396, 588, 619
CviQI	GTAC	3 cut(s)	200, 595, 601
DdeI	CTNAG	3 cut(s)	231, 308, 350
DpnI	GATC	3 cut(s)	215, 360, 431
DpnII	GATC	3 cut(s)	213, 358, 429
Eco24I	GRGCYC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	590
FaeI	CATG	3 cut(s)	170, 545, 601
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	166, 541, 597
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	89, 560
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	3 cut(s)	69, 549, 621
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	619
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	170, 545, 601
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	5 cut(s)	157, 163, 190, 525, 545
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	5 cut(s)	28, 39, 162, 406, 530
Hpy188III	TCNNGA	3 cut(s)	469, 522, 608
HpyCH4III	ACNGT	3 cut(s)	176, 440, 486
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	16, 341
HpyF3I	CTNAG	3 cut(s)	231, 308, 350
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	170, 545, 601
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	213, 358, 429
LpnPI	CCDG	1 cut(s)	429
LweI	GCATC	3 cut(s)	328, 485, 519
MaeI	CTAG	3 cut(s)	69, 549, 621
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	5 cut(s)	103, 115, 170, 254, 514
MalI	GATC	3 cut(s)	215, 360, 431
MboI	GATC	3 cut(s)	213, 358, 429
MboII	GAAGA	4 cut(s)	16, 231, 396, 419
MflI	RGATCY	2 cut(s)	213, 358
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	5 cut(s)	17, 33, 273, 375, 459
MlyI	GAGTC	3 cut(s)	166, 172, 539
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	126, 529, 587
MseI	TTAA	2 cut(s)	99, 488
MspA1I	CMGCKG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	291
NdeII	GATC	3 cut(s)	213, 358, 429
NlaIII	CATG	3 cut(s)	170, 545, 601
NmuCI	GTSAC	3 cut(s)	103, 170, 254
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	59
PciI	ACATGT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	190, 525
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	3 cut(s)	165, 171, 539
PpsI	GAGTC	3 cut(s)	165, 171, 539
Ppu21I	YACGTR	1 cut(s)	220
PscI	ACATGT	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	213, 358
RsaI	GTAC	3 cut(s)	201, 596, 602
RsaNI	GTAC	3 cut(s)	200, 595, 601
SaqAI	TTAA	2 cut(s)	99, 488
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	213, 358, 429
SchI	GAGTC	3 cut(s)	166, 172, 539
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	3 cut(s)	328, 485, 519
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	469, 520
SmoI	CTYRAG	2 cut(s)	469, 520
Sse9I	AATT	5 cut(s)	17, 33, 273, 375, 459
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	3 cut(s)	69, 549, 621
TaaI	ACNGT	3 cut(s)	176, 440, 486
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	59, 584
TasI	AATT	5 cut(s)	17, 33, 273, 375, 459
TatI	WGTACW	3 cut(s)	199, 594, 600
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	190, 525
Tru1I	TTAA	2 cut(s)	99, 488
Tru9I	TTAA	2 cut(s)	99, 488
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	3 cut(s)	103, 170, 254
Tsp45I	GTSAC	3 cut(s)	103, 170, 254
TspDTI	ATGAA	4 cut(s)	17, 45, 314, 433
TspRI	CASTG	1 cut(s)	348
XapI	RAATTY	2 cut(s)	33, 273
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	3 cut(s)	69, 549, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.