Rroxscaffold_1G00070890

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
91856793 .. 91858523
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070890.1

Sequence Viewer

Length: 150 bp
ATGGGACTGAGATTGGTAGAACTTCAAAATGGCAATGATGCATTGAACCTGAGCAGAGATCCAAGATTTGGTCAATTTTTGAAGGAAGCTTTAGCTTTGTTTTATAAGAAGTGGCCGCTAAAATTCAGTTATCTAAAATTCTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.77

Weight (kDa)

9.65

Isoelectric Point (pI)

17.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 122, 137
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 26, 46, 82
AluBI AGCT 2 cut(s) 89, 95
AluI AGCT 2 cut(s) 89, 95
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 122, 137
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmsI GCATC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 42
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 40
BssMI GATC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 8, 50
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 115
CviJI RGCY 3 cut(s) 89, 95, 115
CviKI_1 RGCY 3 cut(s) 89, 95, 115
DdeI CTNAG 2 cut(s) 8, 50
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 43
FaiI YATR 1 cut(s) 105
FaqI GGGAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspEI CC 7 cut(s) 15, 54, 62, 68, 75, 97, 129
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 8, 50
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 62
LweI GCATC 1 cut(s) 28
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MflI RGATCY 1 cut(s) 58
MluCI AATT 3 cut(s) 74, 122, 137
Mph1103I ATGCAT 1 cut(s) 43
NdeII GATC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 105
PsuI RGATCY 1 cut(s) 58
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 58
SetI ASST 3 cut(s) 51, 91, 97
SfaNI GCATC 1 cut(s) 28
SgeI CNNG 2 cut(s) 61, 75
Sse9I AATT 3 cut(s) 74, 122, 137
SsiI CCGC 1 cut(s) 116
TasI AATT 3 cut(s) 74, 122, 137
TauI GCSGC 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 68
XapI RAATTY 2 cut(s) 122, 137
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.