RchiOBHm_Chr1g0355541

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
48194549 .. 48195319
771 bp
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UTR
Exon/CDS
Intron
PRQ58101

Sequence Viewer

Length: 159 bp
ATGAAGAATCAATTGGACGACGTCATTAAGGAGAAGGATGGGTTCATGGTAGAGATTGGGAATTCGTTATCTAATGTTCGAGGAATGGCCATGGAAGGTCAGCCACTGGCCTGCAAGAACTCCCTAATTGTGGCATTGTGTCTGGACATATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.69

Weight (kDa)

4.66

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 87, 108
ApoI RAATTY 1 cut(s) 61
BalI TGGCCA 1 cut(s) 89
BccI CCATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 111
BshFI GGCC 2 cut(s) 89, 110
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 2 cut(s) 89, 110
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 89, 110
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 43
BsuRI GGCC 2 cut(s) 89, 110
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 106
CviAII CATG 2 cut(s) 46, 91
CviJI RGCY 3 cut(s) 89, 103, 110
CviKI_1 RGCY 3 cut(s) 89, 103, 110
EaeI YGGCCR 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 49, 94
FaiI YATR 3 cut(s) 47, 92, 149
FatI CATG 2 cut(s) 45, 90
FokI GGATG 1 cut(s) 50
HaeIII GGCC 2 cut(s) 89, 110
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 49, 94
HinfI GANTC 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 143, 156
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 28, 89
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 49, 94
LpnPI CCDG 3 cut(s) 92, 124, 128
MaeII ACGT 1 cut(s) 21
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 11, 61, 126
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 89
MunI CAATTG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 2 cut(s) 49, 94
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 27
SetI ASST 2 cut(s) 24, 100
SgeI CNNG 7 cut(s) 58, 92, 103, 119, 123, 127, 155
Sse9I AATT 3 cut(s) 11, 61, 126
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 11, 61, 126
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 17, 34
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 1 cut(s) 61
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.