Rh6AG041800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
6145976 .. 6146404
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG041800.1

Sequence Viewer

Length: 429 bp
ATGAATAGGGAGCAGATGGATCAGAGGAACTATGAGATTTCGCAGTTGGATGTCACCATTCCTTATGTGCAAGGAATTGCCATGGAAGGTCAGCCACTGGTCTGCAAGACCTCCCTAATTGAGGTAAGAATTTTTGCTTTCTCAATTTTTTTTTTGGGTCAATTGCTTTCTGATGAAATGGGAGGCAATACTTATATATATATATATATATATATATATAAACTTGTTGTGATCGAAGATATATATTTACTGAAATTTTCCCTCCACATTAGTTTAGTTCCCTCCCTTTTTTTTCGTTCCCTGTTTCTAAACACGATCAAATACACTACTCTTTATGCTCCTCTTGTCTGTCAGTTAAAGAAAAAAAAAAATTCCTCTCGTCTGAATCAAAAAGTTCTCCCGAGTAATTGTGTTTCAATTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.45

Weight (kDa)

8.73

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 3 cut(s) 129, 254, 370
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 417, 422
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 400
ApoI RAATTY 3 cut(s) 129, 254, 370
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 400
BccI CCATC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 400
Bsp143I GATC 3 cut(s) 19, 231, 315
Bsp19I CCATGG 1 cut(s) 81
BspPI GGATC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 19, 231, 315
BssT1I CCWWGG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 3 cut(s) 22, 234, 318
BstMBI GATC 3 cut(s) 19, 231, 315
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 97
CviAII CATG 1 cut(s) 82
CviJI RGCY 2 cut(s) 94, 426
CviKI_1 RGCY 2 cut(s) 94, 426
DpnI GATC 3 cut(s) 21, 233, 317
DpnII GATC 3 cut(s) 19, 231, 315
Eco130I CCWWGG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 85
FatI CATG 1 cut(s) 81
FokI GGATG 1 cut(s) 62
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 385
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 24, 172, 384
Hpy188III TCNNGA 1 cut(s) 400
HpyAV CCTTC 2 cut(s) 80, 416
HpyCH4V TGCA 2 cut(s) 70, 105
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 3 cut(s) 19, 231, 315
LmnI GCTCC 2 cut(s) 10, 343
LpnPI CCDG 2 cut(s) 83, 314
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 21, 233, 317
MboI GATC 3 cut(s) 19, 231, 315
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 2 cut(s) 161, 417
MluCI AATT 9 cut(s) 75, 117, 129, 144, 161, 254, 370, 406, 417
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 8 cut(s) 18, 115, 121, 176, 272, 292, 351, 385
MseI TTAA 1 cut(s) 356
MunI CAATTG 2 cut(s) 161, 417
NcoI CCATGG 1 cut(s) 81
NdeII GATC 3 cut(s) 19, 231, 315
NlaIII CATG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 356
Sau3AI GATC 3 cut(s) 19, 231, 315
SetI ASST 3 cut(s) 91, 113, 126
Sse9I AATT 9 cut(s) 75, 117, 129, 144, 161, 254, 370, 406, 417
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 234
TasI AATT 9 cut(s) 75, 117, 129, 144, 161, 254, 370, 406, 417
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 17, 189
TspRI CASTG 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 3 cut(s) 129, 254, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.